LOCUS BC030220 3015 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens netrin G1, mRNA (cDNA clone MGC:34337 IMAGE:5206594),
complete cds.
ACCESSION BC030220
VERSION BC030220.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3015)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3015)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: h Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 54312077.
FEATURES Location/Qualifiers
source 1..3015
/db_xref="H-InvDB:HIT000050987"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34337 IMAGE:5206594"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3015
/gene="NTNG1"
/gene_synonym="KIAA0976"
/gene_synonym="Lmnt1"
/db_xref="GeneID:22854"
/db_xref="HGNC:HGNC:23319"
/db_xref="MIM:608818"
CDS 603..1919
/gene="NTNG1"
/gene_synonym="KIAA0976"
/gene_synonym="Lmnt1"
/codon_start=1
/product="netrin G1"
/protein_id="AAH30220.1"
/db_xref="GeneID:22854"
/db_xref="HGNC:HGNC:23319"
/db_xref="MIM:608818"
/translation="MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKV
WDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHP
PELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQM
ILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNS
KIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFV
DELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQ
GRPWSPGSYLPIPKGTANTCIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYT
GILCEKLRCEEAGSCGSDSGQGAPPHGSPALLLLTTLLGTASPLVF"
BASE COUNT 927 a 702 c 642 g 744 t
ORIGIN
1 tgcagccgga gcagcaccag caacagcaac agcgagcggg acggagttag gaccgctcgg
61 agcgcacagg tctcgagggt gttggtgcca gaagaaaaga atgattgatg ggaaacagac
121 accgggctat agacactcat ccttttgctt cagatactga tatctcagcc tgcttgagca
181 tcccttgtga gctgtgaaca ttgaggatca ctcagggtta tcggatgtac aacgggagag
241 ccatcgcttt gctaaattat tatctgcaat tggacatctt ttacaaaaac caaactagac
301 ctgagtctaa tagatatgtt ctaagacaaa gaaaaagctg caagttgtta acgcctaaca
361 cacaagtatg ttaggcttcc accaaagtcc tcaatatacc tgaatacgca caatatctta
421 actcttcata tttggttttg ggatctgctt tgaggtccca tcttcattta aaaaaaaata
481 cagagaccta cctacccgta cgcatacata catatgtgta tatatatgta aactagacaa
541 agatcgcaga tcataaagca agctctgctt tagtttccaa gaagattaca aagaatttag
601 agatgtattt gtcaagattc ctgtcgattc atgccctttg ggttacggtg tcctcagtga
661 tgcagcccta ccctttggtt tggggacatt atgatttgtg taagactcag atttacacgg
721 aagaagggaa agtttgggat tacatggcct gccagccgga atccacggac atgacaaaat
781 atctgaaagt gaaactcgat cctccggata ttacctgtgg agaccctcct gagacgttct
841 gtgcaatggg caatccctac atgtgcaata atgagtgtga tgcgagtacc cctgagctgg
901 cacacccccc tgagctgatg tttgattttg aaggaagaca tccctccaca ttttggcagt
961 ctgccacttg gaaggagtat cccaagcctc tccaggttaa catcactctg tcttggagca
1021 aaaccattga gctaacagac aacatagtta ttacctttga atctgggcgt ccagaccaaa
1081 tgatcctgga gaagtctctc gattatggac gaacatggca gccctatcag tattatgcca
1141 cagactgctt agatgctttt cacatggatc ctaaatccgt gaaggattta tcacagcata
1201 cggtcttaga aatcatttgc acagaagagt actcaacagg gtatacaaca aatagcaaaa
1261 taatccactt tgaaatcaaa gacaggttcg cgttttttgc tggacctcgc ctacgcaata
1321 tggcttccct ctacggacag ctggatacaa ccaagaaact cagagatttc tttacagtca
1381 cagacctgag gataaggctg ttaagaccag ccgttgggga aatatttgta gatgagctac
1441 acttggcacg ctacttttac gcgatctcag acataaaggt gcgaggaagg tgcaagtgta
1501 atctccatgc cactgtatgt gtgtatgaca acagcaaatt gacatgcgaa tgtgagcaca
1561 acactacagg tccagactgt gggaaatgca agaagaatta tcagggccga ccttggagtc
1621 caggctccta tctccccatc cccaaaggca ctgcaaatac ctgtatcccc agtatttcca
1681 gtattggtac gaatgtctgc gacaacgagc tcctgcactg ccagaacgga gggacgtgcc
1741 acaacaacgt gcgctgcctg tgcccggccg catacacggg catcctctgc gagaagctgc
1801 ggtgcgagga ggctggcagc tgcggctccg actctggcca gggcgcgccc ccgcacggct
1861 ccccagcgct gctgctgctg accacgctgc tgggaaccgc cagccccctg gtgttctagg
1921 tgtcacctcc agccacaccg gacgggcctg tgccgtgggg aagcagacac aacccaaaca
1981 tttgctacta acataggaaa cacacacata cagacacccc cactcagaca gtgtacaaac
2041 taagaaggcc taactgaact aagccatatt tatcacccgt ggacagcaca tccgagtcaa
2101 gactgttaat ttctgactcc agaggagttg gcagctgttg atattatcac tgcaaatcac
2161 attgccagct gcagagcata ttgtggattg gaaaggctgc gacagccccc caaacaggaa
2221 agacaaaaaa caaacaaatc aaccgaccta aaaacattgg ctactctagc gtggtgcgcc
2281 ctagtacgac tccgcccagt gtgtggacca accaaatagc attctttgct gtcaggtgca
2341 ttgtgggcat aaggaaatct gttacaagct gccatattgg cctgcttccg tccctgaatc
2401 ccttccaacc tgtgctttag tgaacgttgc tctgtaaccc ttgttggttg aaagatttct
2461 ttgtctgatg ttagtgatgc acatgtgtaa cagccccctc taaaagcgca agccagtcat
2521 acccctgtat atcttagcag cactgagtcc agtgcgagca cacacccact atacaagagt
2581 ggctatagga aaaaagaaag tgtatctatc cttttgtatt caaatgaagt tatttttctt
2641 gaactactgt aatatgtaga ttttttgtat tattgccaat ttgtgttacc agacaatctg
2701 ttaatgtatc taattcgaat cagcaaagac tgacatttta ttttgtcctc tttcgttctg
2761 ttttgtttca ctgtgcagag atttctctgt aagggcaacg aacgtgctgg catcaaagaa
2821 tatcagttta catatataac aagtgtaata agattccacc aaaggacatt ctaaatgttt
2881 tcttgttgct ttaacactgg aagatttaaa gaataaaaac tcctgcataa acaaaaaaaa
2941 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3001 aaaaaaaaaa aaaaa
//