LOCUS BC030133 3491 bp mRNA linear HUM 22-FEB-2007
DEFINITION Homo sapiens syndecan 2, mRNA (cDNA clone MGC:14928 IMAGE:4138627),
complete cds.
ACCESSION BC030133
VERSION BC030133.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3491)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3491)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC030133.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: m Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 55925658.
FEATURES Location/Qualifiers
source 1..3491
/db_xref="H-InvDB:HIT000092059"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14928 IMAGE:4138627"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3491
/gene="SDC2"
/gene_synonym="SYND2"
/db_xref="GeneID:6383"
/db_xref="HGNC:HGNC:10659"
/db_xref="MIM:142460"
CDS 605..1210
/gene="SDC2"
/gene_synonym="SYND2"
/codon_start=1
/product="syndecan 2"
/protein_id="AAH30133.1"
/db_xref="GeneID:6383"
/db_xref="HGNC:HGNC:10659"
/db_xref="MIM:142460"
/translation="MRRAWILLTLGLVACVSAESRAELTSDKDMYLDNSSIEEASGVY
PIDDDDYASASGSGADEDVESPELTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQTK
SPEETDKEKVHLSDSERKMDPAEEDTNVYTEKHSDSLFKRTEVLAAVIAGGVIGFLFA
IFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAPTKEFYA"
BASE COUNT 1047 a 684 c 789 g 971 t
ORIGIN
1 gcccggagaa gcaggctcag gagggaggga gccagaggaa aagaagagga ggagaaggag
61 gaggacccgg ggagggaggc gcggcgcggg aggaggaggg gcgcagccgc ggagccagtg
121 gccccgcttg gacgcgctgc tctccagata cccccggagc tccagccgcg cggatcgcgc
181 gctcccgccg ctctgcccct aaacttctgc cgtagctccc tttcaagcca gcgaatttat
241 tccttaaaac cagaaactga acctcggcac gggaaaggag tccgcggagg agcaaaacca
301 cagcagagca agaagagctt cagagagcag ccttcccgga gcaccaactc cgtgtcggga
361 gtgcagaaac caacaagtga gagggcgccg cgttcccggg gcgcagctgc gggcggcggg
421 agcaggcgca ggaggaggaa gcgagcgccc ccgagccccg agcccgagtc cccgagcctg
481 agccgcaatc gctgcggtac tctgctccgg attcgtgtgc gcgggctgcg ccgagcgctg
541 ggcaggaggc ttcgttttgc cctggttgca agcagcggct gggagcagcc ggtccctggg
601 gaatatgcgg cgcgcgtgga tcctgctcac cttgggcttg gtggcctgcg tgtcggcgga
661 gtcgagagca gagctgacat ctgataaaga catgtacctt gacaacagct ccattgaaga
721 agcttcagga gtgtatccta ttgatgacga tgactacgct tctgcgtctg gctcgggagc
781 tgatgaggat gtagagagtc cagagctgac aacatctcga ccacttccaa agatactgtt
841 gactagtgct gctccaaaag tggaaaccac gacgctgaat atacagaaca agatacctgc
901 tcagacaaag tcacctgaag aaactgataa agagaaagtt cacctctctg actcagaaag
961 gaaaatggac ccagccgaag aggatacaaa tgtgtatact gagaaacact cagacagtct
1021 gtttaaacgg acagaagtcc tagcagctgt cattgctggt ggagttattg gctttctctt
1081 tgcaattttt cttatcctgc tgttggtgta tcgcatgaga aagaaggatg aaggaagcta
1141 tgaccttgga gaacgcaaac catccagtgc tgcttatcag aaggcaccta ctaaggagtt
1201 ttatgcgtaa aactccaact tagtgtctct atttatgaga tcactgaact tttcaaaata
1261 aagcttttgc atagaataat gaagatcttt gttttttgtt ttcattaaag agccattctg
1321 gcactttaat gataaaatcc cattgtattt aaaacatttc atgtatttct ttagaacaac
1381 ataaaattaa aatttaacat ctgcagtgtt ctgtgaatag cagtggcaaa atattatgtt
1441 atgaaaaccc tcgatgttca tggaattggt ttaaactttt atgcgcaaat acaaaatgat
1501 tgtctttttc ctatgactca aagatgaaag ctgtttcatt tgtgtcagca tgtctcagat
1561 tgaccttacc aagttggtct tactttgtta atttatctgt tgtccccttc ctctcctctg
1621 ccctcccttc ttgtgccctt aaaaccaaac cctatgcctt ttgtagctgt catggtgcaa
1681 tttgtctttg gaaaattcag ataatggtaa tttagtgtat atgtgatttt caaatatgta
1741 aactttaact tccactttgt ataaattttt aagtgtcaga ctatccattt tacacttgct
1801 ttatttttca ttacctgtag ctttgggcag atttgcaaca gcaaattaat gtgtaaaatt
1861 ggattattac tacaaaaccg tttagtcata tctatctaat cagatcttct tttgggagga
1921 tttgatgtaa gttactgaca agcctcagca aacccaaaga tgttaacagt attttaagaa
1981 gttgctgcag attcctttgg ccactgtatt tgttaatttc ttgcaatttg aaggtacgag
2041 tagaggttta aagaaaaatc agtttttgtt cttaaaaatg catttaagtt gtaaacgtct
2101 ttttaagcct ttgaagtgcc tctgattcta tgtaacttgt tgcagactgg tgttaatgag
2161 tatatgtaac agtttaaaaa aaaagttggt attttataag cacagacaat tctaatggta
2221 acttttgtag tcttatgaat agacataaat tgtaatttgg gaacataaaa actactgaat
2281 aaatcatgtg gcctaatatt gaaaatgtca ctgttataaa ttttgtacat ttttgatcaa
2341 atgtacatct cccctttgct aacggccgtc tgctctcaag gatgacgtgg gtttgatttc
2401 taagtgtttc acagtgtctg taaatcaaga ccaaagagcc tgtcgatgag actgtttatt
2461 accagattca cttctgaatt ggccagagga aatctgaatg tattatcctg tgtgtgtcta
2521 ggtagagata ttggaaggct gccaggggat ttcgaagttt gcaaccttta taggataact
2581 gatggcaata ttaagacaga cgcctgcttt tgcaaataac ttacaagact gtaaattcca
2641 aagatctgaa tggggctttc ctgatgttgg tatctaaggc ttaggcctat agattgattt
2701 acctttggaa ttgtgctcca aatgtctact gaagcttaac cgaagaacta ataaatggac
2761 tacagtagct cacgttacag ggaaggaggg taggcaggga ggctctgtgt gttaaaatga
2821 gggtctcact gctttaggat tgaagtggct ggaaagagtg atgcctgggg aaggagatgg
2881 agttatgagg gtactgtggc tggtactttc tgtactaaac atttcctttt tctattttac
2941 cactaatttt gttttaaact gtgagccgtc caagtcagaa gaagacagca aaaaaagcaa
3001 cttttccaac atacaattta cttttaataa agtatgaata tttcattttg agaacattcc
3061 ctggaattgc cacataattc attaaaaaca tttttttaag caacacttgg aacagtgttt
3121 actttaaatc cttaatggcc ttaattaatt ctcagattcc tgccccatca cttacagaac
3181 caattcactt tagagtgact aaaaggaaac gatagcctag ctttctaaag ccacgctgtg
3241 tccctcaatt acagagggta ggaatgggta tacctctaac tgtgcaaagc agagtgaaat
3301 tcaattcata gaataacaac tgctgggaat atccgtgcca ggaaaagaaa aatttctggc
3361 aaatattttg tcactgctgt aaagcaaaat atttgtgaaa gtgccaaaat aaagtctgtc
3421 atgccaaaag taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3481 aaaaaaaaaa a
//