LOCUS BC030132 2627 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens intercellular adhesion molecule 5, telencephalin, mRNA
(cDNA clone IMAGE:4299082), partial cds.
ACCESSION BC030132
VERSION BC030132.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2627)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2627)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC030132.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: l Column: 19.
FEATURES Location/Qualifiers
source 1..2627
/db_xref="H-InvDB:HIT000092058"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4299082"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2627
/gene="ICAM5"
/gene_synonym="TLCN"
/gene_synonym="TLN"
/db_xref="GeneID:7087"
/db_xref="MIM:601852"
CDS <1..2439
/gene="ICAM5"
/gene_synonym="TLCN"
/gene_synonym="TLN"
/codon_start=1
/product="ICAM5 protein"
/protein_id="AAH30132.2"
/db_xref="GeneID:7087"
/db_xref="MIM:601852"
/translation="LFPLAERPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLT
LLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPHGLGLFEN
SSAPRELRTFSLSPDAPRLAAPRLLEVGSERPVSCTLDGLFPASEARVYLALGDQNLS
PDVTLEGDAFVATATATASAEQEGARQLICNVTLGGENRETRENVTIYSFPAPLLTLS
EPSVSEGQMVTVTCAAGTQALVTLEGVPAAVPGQPAQLQLNATENDDRRSFFCDATLD
VDGETLIKNRSAELRVLYAPRLDDSDCPRSWTWPEGPEQTLRCEARGNPEPSVHCARS
DGGAVLALGLLGPVTRALSGTYRCKAANDQGEAVKDVTLTVEYAPALDSVGCPERITW
LEGTEASLSCVAHGVPPPDVICVRSGELGAVIEGLLRVAREHAGTYRCEATNPRGSAA
KNVAVTVEYGPRFEEPSCPSNWTWVEGSGRLFSCEVDGKPQPSVKCVGSGGATEGVLL
PLAPPDPSPRAPRIPRVLAPGIYVCNATNRHGSVAKTVVVSAESPPEMDESTCPSHQT
WLEGAEASALACAARGRPSPGVRCSREGIPWPEQQRVSREDAGTYHCVATNAHGTDSR
TVTVGVEYRPVVAELAASPPGGVRPGGNFTLTCRAEAWPPAQISWRAPPGALNIGLSS
NNSTLSVAGAMGSHGGEYECAATNAHGRHARRITVRVAGPWLWVAVGGAAGGAALLAA
GAGLAFYVQSTACKKGEYNVQEAESSGEAVCLNGAGGGAGGAAGAEGGPEAAGGAAES
PAEGEVFAIQLTSA"
misc_feature 910..1122
/gene="ICAM5"
/gene_synonym="TLCN"
/gene_synonym="TLN"
/note="IGcam; Region: Immunoglobulin domain cell adhesion
molecule (cam) subfamily"
/db_xref="CDD:cd00931"
misc_feature 1159..1368
/gene="ICAM5"
/gene_synonym="TLCN"
/gene_synonym="TLN"
/note="IGcam; Region: Immunoglobulin domain cell adhesion
molecule (cam) subfamily"
/db_xref="CDD:cd00931"
misc_feature 1801..1890
/gene="ICAM5"
/gene_synonym="TLCN"
/gene_synonym="TLN"
/note="IG_like; Region: Immunoglobulin like"
/db_xref="CDD:cd00097"
misc_feature 1939..2154
/gene="ICAM5"
/gene_synonym="TLCN"
/gene_synonym="TLN"
/note="IG_like; Region: Immunoglobulin like"
/db_xref="CDD:cd00097"
BASE COUNT 478 a 854 c 883 g 412 t
ORIGIN
1 ctcttccccc ttgcagagcg accagatcgc gtagagctga tgccgctgcc tccctggcag
61 ccggtgggcg agaacttcac cctgagctgt agggtccccg gcgccgggcc ccgtgcgagc
121 ctcacgctga ccctgctgcg gggcgcccag gagctgatcc gccgcagctt cgccggtgaa
181 ccaccccgag cgcggggcgc ggtgctcaca gccacggtac tggctcggag ggaggaccat
241 ggagccaatt tctcgtgtcg cgccgagctg gacctgcggc cgcacggact gggactgttt
301 gaaaacagct cggcccccag agagctccga accttctccc tgtctccgga tgccccgcgc
361 ctcgctgctc cccggctctt ggaagttggc tcggaaaggc ccgtgagctg cactctggac
421 ggactgtttc cagcctcaga ggccagggtc tacctcgcac tgggggacca gaatctgagt
481 cctgatgtca ccctcgaagg ggacgcattc gtggccactg ccacagccac agctagcgca
541 gagcaggagg gtgccaggca gctgatctgc aacgtcaccc tggggggcga aaaccgggag
601 acccgggaga acgtgaccat ctacagcttc ccggcaccac tcctgaccct gagcgaaccc
661 agcgtctccg aggggcagat ggtgacagta acctgcgcag ctgggaccca agctctggtc
721 acactggagg gagttccagc cgcggtcccg gggcagcccg cccagcttca gctaaatgcc
781 accgagaacg acgacagacg cagcttcttc tgcgacgcca ccctcgatgt ggacggggag
841 accctgatca agaacaggag cgcagagctt cgtgtcctat acgctccccg gctagacgat
901 tcggactgcc ccaggagttg gacgtggccc gagggcccag agcagacgct gcgctgcgag
961 gcccgcggga acccagaacc ctcagtgcac tgtgcgcgct ccgacggcgg ggccgtgctg
1021 gctctgggcc tgctgggtcc agtcactcgg gcgctctcag gcacttaccg ctgcaaggcg
1081 gccaatgatc aaggcgaggc ggtcaaggac gtaacgctaa cggtggagta cgcaccagcg
1141 ctggacagcg tgggctgccc agaacgcatt acttggctgg agggaacaga agcctcgctg
1201 agctgtgtgg cgcacggggt accgccgcct gatgtgatct gcgtgcgctc tggagaactc
1261 ggggccgtca tcgaggggct gttgcgtgtg gcccgggagc atgcgggcac ttaccgctgc
1321 gaagccacca accctcgggg ctctgcggcc aaaaatgtgg ccgtcacggt ggaatatggc
1381 cccaggtttg aggagccgag ctgccccagc aattggacat gggtggaagg atctgggcgc
1441 ctgttttcct gtgaggtcga tgggaagcca cagccaagcg tgaagtgcgt gggctccggg
1501 ggcgccactg agggggtgct gctgccgctg gcacccccag accctagtcc cagagctccc
1561 agaatcccta gagtcctggc acccggtatc tacgtctgca acgccaccaa ccgccacggc
1621 tccgtggcca aaacagtcgt cgtgagcgcg gagtcgccac cggagatgga tgaatctacc
1681 tgcccaagtc accagacgtg gctggaaggg gctgaggctt ccgcgctggc ctgcgccgcc
1741 cggggtcgcc cttccccagg agtgcgctgc tctcgggaag gcatcccatg gcctgagcag
1801 cagcgcgtgt cccgagagga cgcgggcact taccactgtg tggccaccaa tgcgcatggc
1861 acggactccc ggaccgtcac tgtgggcgtg gaataccggc cagtggtggc cgaacttgct
1921 gcctcgcccc ctggaggcgt gcgcccagga ggaaacttca cgttgacctg ccgcgcggag
1981 gcctggcctc cagcccagat cagctggcgc gcgcccccgg gggccctcaa catcggcctg
2041 tcgagcaaca acagcacact gagcgtggca ggcgccatgg gaagccacgg cggcgagtac
2101 gagtgcgcag ccaccaacgc gcacgggcgc cacgcgcggc gcatcacggt gcgcgtggcc
2161 ggtccgtggc tatgggtcgc cgtgggcggc gcggcggggg gcgcggcgct gctggccgcg
2221 ggggccggcc tggccttcta cgtgcagtcc accgcctgca agaagggcga gtacaacgtg
2281 caggaggccg agagctcagg cgaggccgtg tgtctcaacg gagcgggcgg cggcgctggc
2341 ggggcggcag gcgcggaggg cggacccgag gcggcggggg gcgcggccga gtcgccggcg
2401 gagggcgagg tcttcgccat acagctgaca tcggcgtgag cccgctcccc tctccccgcg
2461 ggccggggga cgccccccag actcacacgg gggcttattt attgctttat ttatttactt
2521 attcatttat ttatgtattc aactccaagg gcgtcacccc cattttctac ccatcccctc
2581 aataaagttt ttataaaggg aaaaaaaaaa aaaaaaaaaa aaaaaaa
//