LOCUS BC030129 1470 bp mRNA linear HUM 24-JAN-2005
DEFINITION Homo sapiens sterile alpha motif domain containing 1, mRNA (cDNA
clone IMAGE:3943601), partial cds.
ACCESSION BC030129
VERSION BC030129.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1470)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1470)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC030129.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 15 Row: m Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction.
FEATURES Location/Qualifiers
source 1..1470
/db_xref="H-InvDB:HIT000092056"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3943601"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1470
/gene="SAMD1"
/db_xref="GeneID:90378"
CDS <1..890
/gene="SAMD1"
/codon_start=3
/product="SAMD1 protein"
/protein_id="AAH30129.1"
/db_xref="GeneID:90378"
/translation="GAARPVSLREVVRYLGGSGGAGGRLTRGRVQGLLEEEAAARGRL
ERTRLGALALPRGDRPGRAPPAASARPSRSKRGGEERVLEKEEEEDDDEDEDEEDDVS
EGSEVPESDRPAGAQHHQLNGERGPQSAKERVKEWTPCGPHQGQDEGRGPAPGSGTRQ
VFSMAAMNKEGGTASVATGPDSPSPVPLPPGKPALPGADGTPFGCPPGRKEKPSDPVE
WTVMDVVEYFTEAGFPEQATAFQEQEIDGKSLLLMQRTDVLTGLSIRLGPALKIYEHH
IKVLQQGHFEDDDPDGFLG"
BASE COUNT 302 a 453 c 427 g 288 t
ORIGIN
1 gcggcgcggc gcggcccgtg agcctgcggg aagtcgtgcg ctacctcggg ggcagcggcg
61 gcgccggcgg tcgcctaacc cgcggccgcg tgcaggggct gctggaggag gaggcggcgg
121 ctcgaggccg tctggagcgc acccgtctcg gagcgcttgc gctgccccgc ggggacaggc
181 ccggacgggc gccgccggcc gccagcgccc gcccgtctcg cagcaagaga ggtggagaag
241 agcgagtact tgagaaagaa gaggaagaag atgatgatga agatgaagat gaagaagatg
301 atgtgtcaga gggctctgaa gtgcccgaga gtgaccgtcc tgcaggtgcc cagcaccacc
361 agcttaacgg cgagcgggga cctcagagtg ccaaggagag ggtcaaggag tggaccccct
421 gcggaccgca ccagggccag gatgaagggc gggggccagc cccgggcagc ggcacccgcc
481 aggtgttctc catggcagcc atgaacaagg aagggggaac agcttctgtt gccaccgggc
541 cagactcccc gtcccccgtg cctttgcccc caggcaaacc agccctacct ggggccgacg
601 ggaccccctt tggctgtcct cccgggcgca aagagaagcc atctgatccc gtcgagtgga
661 ccgtgatgga tgtcgtcgaa tattttactg aggctggatt cccggagcag gcgacagctt
721 tccaagagca ggaaattgat ggcaaatctt tgctgctcat gcagcgcaca gatgtgctca
781 ccggcctgtc catccgcctc gggccagccc tgaaaatcta cgagcaccac atcaaggtgc
841 ttcagcaagg ccactttgag gatgatgacc ccgatggctt cttaggctga gcgcccagcc
901 tcacccctgc cccagcccat tccggccccc atctcaccca agatccccca gagtccagga
961 gctggacggg gacaccctca gccctcataa cagattccaa ggagagggca ccctcttgtc
1021 cttatctttg ccccttgtgt ctgtctcaca cacatctgct cctcagcacg tcggtgtggg
1081 gaggggattg ctccttaaac cccaggtggc tgaccctccc cacccagtcc aggacatttt
1141 aggaaaaaaa aaatgaaatg tggggggctt ctcatctccc caagatcctc ttccgttcag
1201 ccagatgttt cctgtataaa tgtttggatc tgcctgttta ttttggtggg tggtctttcc
1261 tccctcccct accacccatg ccccccttct cagtctgccc ctggcctcca gcccctaggg
1321 gactagctgg gttggggttc ctcgggcctt ttctctcctc cctcttttct ttctgttgat
1381 tgtcgctcca gctggctgta ttgcttttta atattgcacc gaaggttttt taaataaaat
1441 tttaaaaaaa gaaaaaaaaa aaaaaaaaaa
//