LOCUS BC030020 2161 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 55, mRNA (cDNA
clone MGC:33209 IMAGE:4821394), complete cds.
ACCESSION BC030020
VERSION BC030020.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2161)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2161)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC030020.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: i Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41327778.
FEATURES Location/Qualifiers
source 1..2161
/db_xref="H-InvDB:HIT000040936"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33209 IMAGE:4821394"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2161
/gene="DDX55"
/gene_synonym="KIAA1595"
/gene_synonym="MGC33209"
/db_xref="GeneID:57696"
/db_xref="HGNC:HGNC:20085"
CDS 17..1819
/gene="DDX55"
/gene_synonym="KIAA1595"
/gene_synonym="MGC33209"
/codon_start=1
/product="DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
/protein_id="AAH30020.1"
/db_xref="GeneID:57696"
/db_xref="HGNC:HGNC:20085"
/translation="MEHVTEGSWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFM
RNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVL
SHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGRLEDLFRRKAEGLDLAS
CVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQEVENLVRAGLR
NPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQLVHFLRNHKQEKHLVFFST
CACVEYYGKTLEVLVKGVKIMCIHGKMKYKRNKIFMEFRKLQSGILVCTDVMARGIDI
PEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEESYINFLAINQKCPLQ
EMKPQRNTADLLPKLKSMALADRAVFEKGMKAFVSYVQAYAKHECNLIFRLKDLDFAS
LARGFALLRMPKMPELRGKQFPDFVPVDVNTDTIPFKDKIREKQRQKLLEQQRREKTE
NEGRRKFIKNKAWSKQKAKKEKKKKMNEKRKREEGSDIEDEDMEELLNDTRLLKKLKK
GKITEEEFEKGLLTTGKRTIKTVDLGISDLEDGC"
BASE COUNT 649 a 469 c 577 g 466 t
ORIGIN
1 ggcgtaggag cgcgccatgg agcatgtgac agagggctcc tgggagtcgc tgcctgtgcc
61 gctgcacccg caggtgctgg gcgcgctgcg ggagctgggc ttcccgtaca tgacgccggt
121 gcagtccgca accatccctc tgttcatgcg aaacaaagat gtcgctgcag aagcggtcac
181 aggtagtggc aaaacactcg cttttgtcat ccccatcctg gaaattcttc tgagaagaga
241 agagaagtta aaaaagagtc aggttggagc cataatcatc acccccactc gagagctggc
301 cattcaaata gacgaggtcc tgtcgcattt cacgaagcac ttccccgagt tcagccagat
361 tctttggatc ggaggcagga atcctggaga agatgttgag aggtttaagc aacaaggtgg
421 gaacatcatt gtggccactc caggccgctt ggaggacttg ttccggagga aggccgaagg
481 cttggatctg gccagctgtg tgcgatccct ggatgtcctg gtgttggatg aggcagacag
541 acttctggac atggggtttg aggcaagcat caacaccatt ctggagtttt tgccaaagca
601 gaggagaaca ggccttttct ctgccactca gacgcaggaa gtggagaacc tggtgagagc
661 gggcctccgg aaccctgtcc gggtctcagt gaaggagaag ggcgtggcag ccagcagtgc
721 ccagaagacc ccctcccgcc tggaaaacta ctacatggta tgcaaggcag atgagaaatt
781 taatcagctg gtccattttc ttcgcaatca taagcaggag aaacacctgg tcttcttcag
841 cacctgtgcc tgtgtggaat actatgggaa gactctggaa gtgctggtga agggcgtgaa
901 gattatgtgc attcacggaa agatgaaata taaacgcaat aagatcttca tggagttccg
961 caaattgcaa agtgggattt tagtgtgcac tgatgtgatg gcccggggaa ttgatattcc
1021 tgaagtcaac tgggttttgc agtatgaccc tcccagcaat gcaagtgcct tcgtgcatcg
1081 ctgcggtcgc acagctcgca ttggccacgg gggcagcgct ctggtgttcc tcctgcccat
1141 ggaagagtca tacatcaatt tccttgcaat taaccaaaaa tgccccctgc aggagatgaa
1201 gccccagaga aacacagcgg accttctgcc aaaactcaag tccatggccc tggctgacag
1261 agctgtgttt gaaaagggca tgaaagcttt tgtgtcatat gtccaagctt atgcaaagca
1321 tgaatgcaac ctgattttca gattaaagga tcttgatttt gccagccttg ctcgaggttt
1381 tgccctgctg aggatgccca agatgccaga attgagaggg aagcagtttc cagattttgt
1441 gcccgtggac gttaataccg acacgattcc atttaaagat aaaatcagag aaaagcagag
1501 gcagaaactc ctggagcaac aaagaagaga gaaaacagaa aatgaaggga gaagaaaatt
1561 cataaaaaat aaagcttggt caaagcagaa ggccaaaaaa gaaaagaaga aaaaaatgaa
1621 tgagaaaagg aaaagggaag agggttctga tattgaagat gaggacatgg aagaacttct
1681 taatgacaca agactcttga aaaaacttaa gaaaggcaaa ataactgaag aagaatttga
1741 gaagggcttg ttgacaactg gcaaaagaac aatcaagaca gtggatttag ggatctcaga
1801 tttggaagat ggctgctaat tccagtgcca cagatgaacc cacaaggaca tagctgttcc
1861 ctaacttggt ggatggctcc agtttgcttt taacgaaaat cacaacttca ggagacatct
1921 gaaaagaatg atgtctctga aagctgtcct ttcagatgag ggagaaatga aggatttcac
1981 acttcagaat attttactaa aaacattcca gtcttggccg ggtgcggtgg ctcctgccta
2041 taatcccagc actttgggag gctgaggcag gaggatcact tgagcccagg agttcaagac
2101 cagcctggga acacagcgag accctctcat taaaaacaac aaaacaaaaa aaaaaaaaaa
2161 a
//