LOCUS BC030018 1895 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens RNA binding motif protein, Y-linked, family 1, member
F, mRNA (cDNA clone MGC:33094 IMAGE:5269012), complete cds.
ACCESSION BC030018
VERSION BC030018.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1895)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1895)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC030018.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: n Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34303936.
FEATURES Location/Qualifiers
source 1..1895
/db_xref="H-InvDB:HIT000040934_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33094 IMAGE:5269012"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1895
/gene="RBMY1F"
/gene_synonym="MGC33094"
/gene_synonym="YRRM2"
/db_xref="GeneID:159163"
/db_xref="HGNC:HGNC:23974"
CDS 113..1603
/gene="RBMY1F"
/gene_synonym="MGC33094"
/gene_synonym="YRRM2"
/codon_start=1
/product="RNA binding motif protein, Y-linked, family 1,
member F"
/protein_id="AAH30018.1"
/db_xref="GeneID:159163"
/db_xref="HGNC:HGNC:23974"
/translation="MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRT
SKSRGFAFITFENPADAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRN
RSPSGSLRSARGSSGGTRGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGG
PPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATN
DGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHA
YRDYGHSRRDESYSRGYRNHRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHP
SSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRD
ALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVC
RKDQRNPPSLGRVLPDPREAYGSSSYVASIVDGGESRSEKGDSSRY"
BASE COUNT 588 a 364 c 451 g 492 t
ORIGIN
1 agctccagct gtccctcccg cagttggccc tgtggtgttc cgaagccggt tacgtacggc
61 ctgagggcca ggcgaacctc aggctctttg tcctactaaa aagcgcagca caatggtaga
121 agcagatcat cctggcaagc ttttcattgg tggcctcaat agagaaacca atgagaagat
181 gcttaaagca gtatttggga aacatggtcc catatcagaa gttcttttga taaaggatcg
241 aaccagcaaa tccagaggct ttgcatttat tacttttgag aaccctgcag atgctaagaa
301 tgctgcgaaa gatatgaatg gaacgtcttt gcatggaaaa gcaataaaag tagaacaagc
361 caagaaacca tcttttcaaa gtggtggtag gcggagacca ccagcttctt cgagaaacag
421 aagcccttca ggaagtctga gatctgcaag aggaagcagt ggaggaacaa gagggtggct
481 tccctcacat gaagggcacc tggatgatgg tggatacact cctgatctca agatgagtta
541 ttctagggga ctcattccag ttaaaagagg tccatcttca agaagtggag gtcctcctcc
601 gaaaaaatct gctccttctg ctgtggcaag aagcaatagt tggatgggaa gccaaggtcc
661 catgtcacaa agaagagaga attatggagt tcctccacgc agagcgacaa tatcttcctg
721 gagaaatgat cgcatgtcaa caagacatga tggttatgca actaacgatg gaaatcatcc
781 aagttgccaa gaaacgaggg attatgctcc accatctaga ggctatgcat accgtgataa
841 tggtcattct aatcgggatg aacattcctc tagaggatat agaaatcatc gaagttcccg
901 agaaactagg gattatgctc caccatctag aggccatgca taccgtgatt atggtcattc
961 tcgtcgggat gaaagttatt ctagaggata cagaaatcat cgaagttccc gagaaactag
1021 ggagtatgct ccaccatcta gaggccatgg ataccgtgat tatggtcatt ctcgtcgaca
1081 tgaaagttat tctagaggat atagaaatca tccaagttcc cgagaaacca gggattatgc
1141 tccaccacat agagactatg cataccgtga ttatggtcat tctagttggg atgaacattc
1201 ctctagagga tatagttatc atgatggcta cggtgaggcc cttggtagag atcattctga
1261 acatctaagt ggaagttctt atagagatgc acttcagaga tacgggacct ctcatggtgc
1321 accacctgca agagggcctc ggatgtctta tggtggaagc acctgccacg catatagtaa
1381 tacacgagat agatatggca gaagttggga gagttactcg agctgtggtg attttcatta
1441 ttgtgatcgt gagcatgttt gcagaaaaga ccaaaggaat ccgccttctc tgggtagggt
1501 gctccctgat cctcgtgaag catatggtag ctcaagttat gtggcatcta tagtagatgg
1561 tggggagagt cgatctgaaa aaggagactc gagcagatat taaagcaagc attgaaaata
1621 atagttattg cataccaatc cttgtttgca aatcaaaaat tgaaatgtta tttctgcatt
1681 gttacctgca tattactgaa agaaacatgt tggttttgtg gagagaggta gatactaact
1741 tcctccatga attttttgag gtattcaaag gaaaaggaat tgttttcaaa gtaatttcat
1801 acttgttgat gctatttgaa aagtgtttag atgtaatatc taccttaaaa ttttcacaat
1861 aaaattttac atgtactgca aaaaaaaaaa aaaaa
//