LOCUS BC030016 3199 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens gephyrin, mRNA (cDNA clone MGC:32983 IMAGE:4826821), complete cds. ACCESSION BC030016 VERSION BC030016.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3199) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3199) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (06-MAY-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Sep 16, 2003 this sequence version replaced BC030016.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 46 Row: o Column: 14 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 66932974. FEATURES Location/Qualifiers source 1..3199 /db_xref="H-InvDB:HIT000040933" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:32983 IMAGE:4826821" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3199 /gene="GPHN" /gene_synonym="GEPH" /gene_synonym="GPH" /gene_synonym="GPHRYN" /gene_synonym="KIAA1385" /db_xref="GeneID:10243" /db_xref="HGNC:HGNC:15465" /db_xref="MIM:603930" CDS 13..2322 /gene="GPHN" /gene_synonym="GEPH" /gene_synonym="GPH" /gene_synonym="GPHRYN" /gene_synonym="KIAA1385" /codon_start=1 /product="gephyrin" /protein_id="AAH30016.1" /db_xref="GeneID:10243" /db_xref="HGNC:HGNC:15465" /db_xref="MIM:603930" /translation="MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQ DPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKE VIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILP ALPHAIDLLRDAIVKVKEVHDELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEE KKDSGVASTEDSSSSHITAAAIAAKKHPFYTSPAVVMAHGEQPIPGLINYSHHSTDER IPDSIISRGVQVLPRDTASLSTTPSESPRAQATSRLSTASCPTPKVQSRCSSKENILR ASHSAVDITKVARRHRMSPFPLTSMDKAFITVLEMTPVLGTEIINYRDGMGRVLAQDV YAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQTVMPGQVMRVTTGAPI PCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGT HMGPSEIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLAT IQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLH AQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQGI LDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEPLPWAQSTGNQMSSRLMSMRSAN GLLMLPPKTEQYVELHKGEVVDVMVIGRL" BASE COUNT 959 a 713 c 700 g 827 t ORIGIN 1 gtgctgggaa acatggcgac cgagggaatg atccttacta accacgacca tcaaatccgt 61 gtcggagtcc ttacagtgag tgatagttgc ttcaggaatc ttgcagaaga ccgcagtggg 121 ataaatctca aagatctcgt acaagatcct tctttgttgg gtgggactat atcagcatac 181 aagatagtac cagatgaaat agaagaaatc aaggaaaccc tgatagattg gtgtgatgaa 241 aaggaactta atttgatatt aacaactgga ggaacaggat ttgcaccacg agatgtcact 301 ccagaggcca caaaagaagt aatagaacgg gaagcaccag ggatggccct ggcaatgctg 361 atgggatcac ttaatgttac acctctgggc atgctctcta ggcctgtatg tggaatcaga 421 gggaaaacgc ttataattaa cctgccaggt agcaagaaag gatctcagga atgctttcaa 481 ttcatactgc cagctctacc tcatgccatt gaccttttac gtgatgccat tgtaaaagta 541 aaggaggtgc atgatgaact tgaagatttg ccttccccac ctccccctct ttcccctcct 601 cctactacca gcccccataa acagacagaa gacaaaggag ttcaatgtga ggaagaggaa 661 gaagagaaga aagacagtgg tgttgcttca acagaagata gttcctcatc acatataact 721 gcagcagcca ttgctgccaa gaagcatcca ttctacacca gtcctgctgt tgtcatggca 781 cacggtgaac agcccatccc tggtctcatc aattattccc atcattcaac agatgaacgg 841 attccagact ccatcatttc tcgtggtgtt caggtgctcc cacgagacac agcctccctc 901 agcactactc cttcagaatc gcctcgtgct caggctacat ctcgcctctc tacagcttcc 961 tgcccaacac caaaagtcca gtccaggtgc agcagcaagg agaacattct cagagccagt 1021 cacagtgctg tcgatatcac caaggtggct agaagacatc gcatgtctcc ttttcctctg 1081 acatctatgg acaaagcctt tatcacagtc ctggagatga ctccggtgct tgggacagaa 1141 atcatcaatt accgagatgg aatggggcga gtccttgctc aagatgtata tgcaaaagac 1201 aatttacccc ccttcccagc atcagtaaaa gatggctatg ctgtccgagc tgctgatggc 1261 ccaggagatc gtttcatcat tggggaatcc caagctggtg aacagccaac tcagacagta 1321 atgccaggac aagtcatgcg ggttacaaca ggtgctccaa taccctgcgg tgctgatgca 1381 gtagtacaag tggaagatac cgaacttatc agggaatcag atgatggcac tgaagaactt 1441 gaagtgcgaa ttctggtgca agctcggcca ggccaagata tcaggcccat cggccatgac 1501 attaaaagag gggaatgtgt tttggccaaa ggaacccaca tgggcccctc agagattggt 1561 cttctggcaa ctgtaggtgt cacagaggtt gaagttaata agtttccagt ggttgcagtc 1621 atgtcaacag ggaatgagct gctaaatcct gaagatgacc tcttaccagg gaagattcga 1681 gacagcaatc gttcaactct tctagcaaca attcaggaac atggttaccc cacgatcaac 1741 ttgggtattg taggagacaa cccagatgac ttactcaatg ccttgaatga gggtatcagt 1801 cgtgctgatg tcatcatcac atcagggggt gtatccatgg gggaaaagga ctatctcaag 1861 caggtgctgg acattgatct tcatgctcag atccattttg gcagggtttt tatgaaacca 1921 ggcttgccaa caacatttgc aactttggat attgatggtg taagaaaaat aatctttgca 1981 ctacctggga atcctgtatc ggctgtggtc acctgcaatc tctttgttgt gcctgcactg 2041 aggaaaatgc agggcatctt ggatcctcgg ccaaccatca tcaaagcaag gttatcatgt 2101 gatgtaaaac ttgatcctcg tccagaatac catcggtgta tactaacttg gcatcaccaa 2161 gaaccactac cttgggcaca gagtacaggt aatcaaatga gcagccgtct gatgagcatg 2221 cgcagtgcca atggattgtt gatgctacct ccaaagacag aacagtacgt ggagctccac 2281 aaaggcgagg tggtggatgt catggtcatt ggacggctat gatggtcacc agcaggagaa 2341 agctttgatg catgtccaca tatcattgac tgtatcctgt aatatgcaac ggcacagcta 2401 gttttcccga tttggataaa agttgatctg tatagtcaac atcttgaact atatttcaaa 2461 tgaatttaaa tatcttttaa agaaaaaaac acctaaaaat aaatcttaac agaaaattct 2521 gttctgatta tatcaaggca aatttttcct ttcttgcaaa ttgctttgtg tgttcaatgc 2581 taggtctgat agcgatagct tttagtagac agcggtaggt gcctgcagaa cttgtgtttt 2641 tctcatcttt aaaatacaac tacttatgct cttaaatcaa ggctgtctgc ttatttatac 2701 tagcgtaggc aacacttgga tttcccttct tagtatgctt cataactgct ttacagagag 2761 cttttgcttg ttctttctca tgtatctcgt gtttatgtgc acagtgccaa aagaagactg 2821 actgggtgga ggctctgcct tgcctcaaga accatcccct gcagagcatc cagggaggtt 2881 tctcgcccca atagcctcac ggcacagtac tcttgggcag taactggaca ccttttattt 2941 gaagaaacaa actgaagaaa aaatgcttcc ttaagtgctg acagcctttt taaccaatac 3001 atttaaaatt gtacagaaca aaaaaataaa atcaaagact gatcttgtac agatattagt 3061 gttaccagca ttcatgtgga agtcaagagc aaagacaaaa taatgttaaa caattctgta 3121 ccataacatt ttctgtaatg atactgaaac ttaatgaata aaaaaattcc ttgatcatta 3181 tttaaaaaaa aaaaaaaaa //