LOCUS       BC030016                3199 bp    mRNA    linear   HUM 17-JUL-2006
DEFINITION  Homo sapiens gephyrin, mRNA (cDNA clone MGC:32983 IMAGE:4826821),
            complete cds.
ACCESSION   BC030016
VERSION     BC030016.2
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3199)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 3199)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAY-2002) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     On Sep 16, 2003 this sequence version replaced BC030016.1.
            Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
            cDNA Library Preparation: Michael J. Brownstein (NHGRI) &  Shiraki
            Toshiyuki and Piero Carninci (RIKEN)
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Institute for Systems Biology
            http://www.systemsbiology.org
            contact: amadan@systemsbiology.org
            Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
            Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 46 Row: o Column: 14
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 66932974.
FEATURES             Location/Qualifiers
     source          1..3199
                     /db_xref="H-InvDB:HIT000040933"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:32983 IMAGE:4826821"
                     /tissue_type="Testis"
                     /clone_lib="NIH_MGC_97"
                     /lab_host="DH10B"
                     /note="Vector: pBluescriptR"
     gene            1..3199
                     /gene="GPHN"
                     /gene_synonym="GEPH"
                     /gene_synonym="GPH"
                     /gene_synonym="GPHRYN"
                     /gene_synonym="KIAA1385"
                     /db_xref="GeneID:10243"
                     /db_xref="HGNC:HGNC:15465"
                     /db_xref="MIM:603930"
     CDS             13..2322
                     /gene="GPHN"
                     /gene_synonym="GEPH"
                     /gene_synonym="GPH"
                     /gene_synonym="GPHRYN"
                     /gene_synonym="KIAA1385"
                     /codon_start=1
                     /product="gephyrin"
                     /protein_id="AAH30016.1"
                     /db_xref="GeneID:10243"
                     /db_xref="HGNC:HGNC:15465"
                     /db_xref="MIM:603930"
                     /translation="MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQ
                     DPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKE
                     VIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILP
                     ALPHAIDLLRDAIVKVKEVHDELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEE
                     KKDSGVASTEDSSSSHITAAAIAAKKHPFYTSPAVVMAHGEQPIPGLINYSHHSTDER
                     IPDSIISRGVQVLPRDTASLSTTPSESPRAQATSRLSTASCPTPKVQSRCSSKENILR
                     ASHSAVDITKVARRHRMSPFPLTSMDKAFITVLEMTPVLGTEIINYRDGMGRVLAQDV
                     YAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQTVMPGQVMRVTTGAPI
                     PCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGT
                     HMGPSEIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLAT
                     IQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLH
                     AQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQGI
                     LDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEPLPWAQSTGNQMSSRLMSMRSAN
                     GLLMLPPKTEQYVELHKGEVVDVMVIGRL"
BASE COUNT          959 a          713 c          700 g          827 t
ORIGIN      
        1 gtgctgggaa acatggcgac cgagggaatg atccttacta accacgacca tcaaatccgt
       61 gtcggagtcc ttacagtgag tgatagttgc ttcaggaatc ttgcagaaga ccgcagtggg
      121 ataaatctca aagatctcgt acaagatcct tctttgttgg gtgggactat atcagcatac
      181 aagatagtac cagatgaaat agaagaaatc aaggaaaccc tgatagattg gtgtgatgaa
      241 aaggaactta atttgatatt aacaactgga ggaacaggat ttgcaccacg agatgtcact
      301 ccagaggcca caaaagaagt aatagaacgg gaagcaccag ggatggccct ggcaatgctg
      361 atgggatcac ttaatgttac acctctgggc atgctctcta ggcctgtatg tggaatcaga
      421 gggaaaacgc ttataattaa cctgccaggt agcaagaaag gatctcagga atgctttcaa
      481 ttcatactgc cagctctacc tcatgccatt gaccttttac gtgatgccat tgtaaaagta
      541 aaggaggtgc atgatgaact tgaagatttg ccttccccac ctccccctct ttcccctcct
      601 cctactacca gcccccataa acagacagaa gacaaaggag ttcaatgtga ggaagaggaa
      661 gaagagaaga aagacagtgg tgttgcttca acagaagata gttcctcatc acatataact
      721 gcagcagcca ttgctgccaa gaagcatcca ttctacacca gtcctgctgt tgtcatggca
      781 cacggtgaac agcccatccc tggtctcatc aattattccc atcattcaac agatgaacgg
      841 attccagact ccatcatttc tcgtggtgtt caggtgctcc cacgagacac agcctccctc
      901 agcactactc cttcagaatc gcctcgtgct caggctacat ctcgcctctc tacagcttcc
      961 tgcccaacac caaaagtcca gtccaggtgc agcagcaagg agaacattct cagagccagt
     1021 cacagtgctg tcgatatcac caaggtggct agaagacatc gcatgtctcc ttttcctctg
     1081 acatctatgg acaaagcctt tatcacagtc ctggagatga ctccggtgct tgggacagaa
     1141 atcatcaatt accgagatgg aatggggcga gtccttgctc aagatgtata tgcaaaagac
     1201 aatttacccc ccttcccagc atcagtaaaa gatggctatg ctgtccgagc tgctgatggc
     1261 ccaggagatc gtttcatcat tggggaatcc caagctggtg aacagccaac tcagacagta
     1321 atgccaggac aagtcatgcg ggttacaaca ggtgctccaa taccctgcgg tgctgatgca
     1381 gtagtacaag tggaagatac cgaacttatc agggaatcag atgatggcac tgaagaactt
     1441 gaagtgcgaa ttctggtgca agctcggcca ggccaagata tcaggcccat cggccatgac
     1501 attaaaagag gggaatgtgt tttggccaaa ggaacccaca tgggcccctc agagattggt
     1561 cttctggcaa ctgtaggtgt cacagaggtt gaagttaata agtttccagt ggttgcagtc
     1621 atgtcaacag ggaatgagct gctaaatcct gaagatgacc tcttaccagg gaagattcga
     1681 gacagcaatc gttcaactct tctagcaaca attcaggaac atggttaccc cacgatcaac
     1741 ttgggtattg taggagacaa cccagatgac ttactcaatg ccttgaatga gggtatcagt
     1801 cgtgctgatg tcatcatcac atcagggggt gtatccatgg gggaaaagga ctatctcaag
     1861 caggtgctgg acattgatct tcatgctcag atccattttg gcagggtttt tatgaaacca
     1921 ggcttgccaa caacatttgc aactttggat attgatggtg taagaaaaat aatctttgca
     1981 ctacctggga atcctgtatc ggctgtggtc acctgcaatc tctttgttgt gcctgcactg
     2041 aggaaaatgc agggcatctt ggatcctcgg ccaaccatca tcaaagcaag gttatcatgt
     2101 gatgtaaaac ttgatcctcg tccagaatac catcggtgta tactaacttg gcatcaccaa
     2161 gaaccactac cttgggcaca gagtacaggt aatcaaatga gcagccgtct gatgagcatg
     2221 cgcagtgcca atggattgtt gatgctacct ccaaagacag aacagtacgt ggagctccac
     2281 aaaggcgagg tggtggatgt catggtcatt ggacggctat gatggtcacc agcaggagaa
     2341 agctttgatg catgtccaca tatcattgac tgtatcctgt aatatgcaac ggcacagcta
     2401 gttttcccga tttggataaa agttgatctg tatagtcaac atcttgaact atatttcaaa
     2461 tgaatttaaa tatcttttaa agaaaaaaac acctaaaaat aaatcttaac agaaaattct
     2521 gttctgatta tatcaaggca aatttttcct ttcttgcaaa ttgctttgtg tgttcaatgc
     2581 taggtctgat agcgatagct tttagtagac agcggtaggt gcctgcagaa cttgtgtttt
     2641 tctcatcttt aaaatacaac tacttatgct cttaaatcaa ggctgtctgc ttatttatac
     2701 tagcgtaggc aacacttgga tttcccttct tagtatgctt cataactgct ttacagagag
     2761 cttttgcttg ttctttctca tgtatctcgt gtttatgtgc acagtgccaa aagaagactg
     2821 actgggtgga ggctctgcct tgcctcaaga accatcccct gcagagcatc cagggaggtt
     2881 tctcgcccca atagcctcac ggcacagtac tcttgggcag taactggaca ccttttattt
     2941 gaagaaacaa actgaagaaa aaatgcttcc ttaagtgctg acagcctttt taaccaatac
     3001 atttaaaatt gtacagaaca aaaaaataaa atcaaagact gatcttgtac agatattagt
     3061 gttaccagca ttcatgtgga agtcaagagc aaagacaaaa taatgttaaa caattctgta
     3121 ccataacatt ttctgtaatg atactgaaac ttaatgaata aaaaaattcc ttgatcatta
     3181 tttaaaaaaa aaaaaaaaa
//