LOCUS BC029908 1082 bp mRNA linear HUM 19-APR-2005
DEFINITION Homo sapiens tetraspanin 16, mRNA (cDNA clone MGC:34382
IMAGE:5168677), complete cds.
ACCESSION BC029908
VERSION BC029908.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1082)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1082)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 51 Row: b Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21265098.
FEATURES Location/Qualifiers
source 1..1082
/db_xref="H-InvDB:HIT000040920"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34382 IMAGE:5168677"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1082
/gene="TSPAN16"
/gene_synonym="TM-8"
/gene_synonym="TM4-B"
/gene_synonym="TM4SF16"
/db_xref="GeneID:26526"
CDS 130..612
/gene="TSPAN16"
/gene_synonym="TM-8"
/gene_synonym="TM4-B"
/gene_synonym="TM4SF16"
/codon_start=1
/product="TSPAN16 protein"
/protein_id="AAH29908.1"
/db_xref="GeneID:26526"
/translation="MAEIHTPYSSLKKLLSLLNGFVAVSGIILVGLGIGGKCGGASLT
NVLGLSSAYLLHVGNLCLVMGCITVLLGCAGWYGATKESRGTLLFCILSMVIVLIMEV
TAATVVLLFFPIVGDVALEHTFVTLRKNYRGYNEPDDYSTQWNLVMEKGLSKYFFSSL
"
BASE COUNT 287 a 254 c 265 g 276 t
ORIGIN
1 ggacacagag gggcagagca agtcagcatt ggcgcccctt cctcagatcc ctatcatctt
61 gggaaacagt agcccagagg ttcaggaaga tgttaactta aatgttcagg gtgccccagt
121 ctgttcagca tggctgaaat ccacactccg tattcttcct tgaagaaact gttatcttta
181 ctcaatggct tcgtggctgt gtctggcatc atcctagttg gcctgggcat tggtggtaaa
241 tgtggagggg cctctctgac gaatgtcctc gggctgtcct ccgcatacct ccttcacgtt
301 ggcaacctgt gcctggtgat gggatgcatc acggtactgc ttggctgtgc cgggtggtat
361 ggagcgacta aagagagcag aggcacgctc ttgttttgca tcctgtcaat ggttattgtc
421 ctcatcatgg aagttacagc tgccacagtg gtccttcttt tctttccaat tgttggagat
481 gtggccttgg aacacacctt cgtgaccctg aggaagaatt acagaggtta caacgagcca
541 gacgactatt ctacacagtg gaacttggtc atggagaagg gactctccaa gtatttcttc
601 tcctctctat agctaaagtg ctgtggggtg aataactaca cagatttttc tggctcttcc
661 ttcgaaatga caacgggcca cacctacccc aggagttgct gtaaatccat cggaagtgtg
721 tcctgtgacg gacgcgatgt gtctccaaac gtcatccacc agaagggctg tttccataaa
781 ctcctaaaaa tcaccaagac tcagagcttc accctgagtg ggagctctct gggagctgca
841 gtgatacagt tgccaggaat tcttgccact ttgctgctgt ttatcgagct gggctgacac
901 ccaggcctgg agaagatgag acacctgggc ccatctggct gctggagatt cagtctcagt
961 tttatttctc tgtggcactc actgcttctg gaggggagac tgttaataaa agatttggga
1021 aacccccaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1081 aa
//