LOCUS BC029896 2038 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sialic acid binding Ig-like lectin 5, mRNA (cDNA clone
MGC:34619 IMAGE:5178889), complete cds.
ACCESSION BC029896
VERSION BC029896.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2038)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2038)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 51 Row: p Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4502658.
FEATURES Location/Qualifiers
source 1..2038
/db_xref="H-InvDB:HIT000040916"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34619 IMAGE:5178889"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2038
/gene="SIGLEC5"
/gene_synonym="CD170"
/gene_synonym="OB-BP2"
/gene_synonym="OBBP2"
/gene_synonym="SIGLEC-5"
/db_xref="GeneID:8778"
/db_xref="HGNC:HGNC:10874"
/db_xref="MIM:604200"
CDS 42..1697
/gene="SIGLEC5"
/gene_synonym="CD170"
/gene_synonym="OB-BP2"
/gene_synonym="OBBP2"
/gene_synonym="SIGLEC-5"
/codon_start=1
/product="sialic acid binding Ig-like lectin 5"
/protein_id="AAH29896.1"
/db_xref="GeneID:8778"
/db_xref="HGNC:HGNC:10874"
/db_xref="MIM:604200"
/translation="MLPLLLLPLLWGGSLQEKPVYELQVQKSVTVQEGLCVLVPCSFS
YPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS
LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPT
RLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQ
GAQVTTERTVQLNVSYAPQTITIFRNGIALEILQNTSYLPVLEGQALRLLCDAPSNPP
AHLSWFQGSPALNATPISNTGILELRRVRSAEEGGFTCRAQHPLGFLQIFLNLSVYSL
PQLLGPSCSWEAEGLHCRCSFRARPAPSLCWRLEEKPLEGNSSQGSFKVNSSSAGPWA
NSSLILHGGLSSDLKVSCKAWNIYGSQSGSVLLLQGRSNLGTGVVPAALGGAGVMALL
CICLCLIFFLIVKARRKQAAGRPEKMDDEDPIMGTITSGSRKKPWPDSAGDQASPPGD
APPLEEQKELHYASLSFSEMKSREPKDQEAPSTTEYSEIKTSK"
BASE COUNT 481 a 602 c 556 g 399 t
ORIGIN
1 gccggacctg ggactgggct ggggccctgg cggatggaga catgctgccc ctgctgctgc
61 tgcccctgct gtgggggggg tccctgcagg agaagccagt gtacgagctg caagtgcaga
121 agtcggtgac ggtgcaggag ggcctgtgcg tccttgtgcc ctgctccttc tcttacccct
181 ggagatcctg gtattcctct cccccactct acgtctactg gttccgggac ggggagatcc
241 catactacgc tgaggttgtg gccacaaaca acccagacag aagagtgaag ccagagaccc
301 agggccgatt ccgcctcctt ggggatgtcc agaagaagaa ctgctccctg agcatcggag
361 atgccagaat ggaggacacg ggaagctatt tcttccgcgt ggagagagga agggatgtaa
421 aatatagcta ccaacagaat aagctgaact tggaggtgac agccctgata gagaaacccg
481 acatccactt tctggagcct ctggagtccg gccgccccac aaggctgagc tgcagccttc
541 caggatcctg tgaagcggga ccacctctca cattctcctg gacggggaat gccctcagcc
601 ccctggaccc cgagaccacc cgctcctcgg agctcaccct cacccccagg cccgaggacc
661 atggcaccaa cctcacctgt cagatgaaac gccaaggagc tcaggtgacc acggagagaa
721 ctgtccagct caatgtctcc tatgcaccac agaccatcac catcttcagg aacggcatag
781 ccctagagat cctgcaaaac acctcatacc ttccggtcct ggagggccag gctctgcggc
841 tgctctgtga tgctcccagc aacccccctg cacacctgag ctggttccag ggctcccctg
901 ccctgaacgc cacccccatc tccaataccg ggatcttgga gcttcgtcga gtaaggtctg
961 cagaagaagg aggcttcacc tgccgcgctc agcacccgct gggcttcctg caaatttttc
1021 tgaatctctc agtttactcc ctcccacagt tgctgggccc ctcctgctcc tgggaggctg
1081 agggtctgca ctgcagatgc tcctttcgag cccggccggc cccctccctg tgctggcggc
1141 ttgaggagaa gccgctggag gggaacagca gccagggctc attcaaggtc aactccagct
1201 cagctgggcc ctgggccaac agctccctga tcctccacgg ggggctcagc tccgacctca
1261 aagtcagctg caaggcctgg aacatctatg ggtcccagag cggctctgtc ctgctgctgc
1321 aagggagatc gaaccttggg acaggagtgg ttcctgcagc ccttggtggt gctggtgtca
1381 tggccctgct ctgtatctgt ctgtgcctca tcttcttttt aatagtgaaa gcccgcagga
1441 agcaagcagc tgggagacca gagaaaatgg atgatgaaga ccccattatg ggtaccatca
1501 cctcgggttc caggaagaag ccctggccag acagcgccgg agatcaagca tctcctcctg
1561 gggatgcccc tcccttggaa gaacaaaagg agctccatta tgcctccctt agtttttctg
1621 agatgaagtc gagggagcct aaggaccagg aggccccaag caccacggag tactcggaga
1681 tcaagacaag caagtgagga tttgcccaga gttcagtcct ggctggagga gccacagcct
1741 gtctggggga aaggacaagt cagggaccac ttgctgaagc acgaagagcc cttgtggcaa
1801 tgttaacatt aactgatgtt taagtgctcc aagcagagca gaaagaaaac agatgatgga
1861 attagagagg tgggctcaaa tctaggccct ggcactgtca tcaagcaatt cactgcatcc
1921 ctctgtgcct cagtttccca ttctgtaaat cagagatcat gcatgctacc tcaaaggttg
1981 ttgtgaacat taaagaaatc aacacatgga aatcaaaaaa aaaaaaaaaa aaaaaaaa
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