LOCUS BC029851 1047 bp mRNA linear HUM 06-MAR-2007
DEFINITION Homo sapiens sterile alpha motif domain containing 3, mRNA (cDNA
clone IMAGE:5169922), complete cds.
ACCESSION BC029851
VERSION BC029851.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1047)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1047)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 51 Row: c Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22749150
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1047
/db_xref="H-InvDB:HIT000040897"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5169922"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1047
/gene="SAMD3"
/db_xref="GeneID:154075"
/db_xref="HGNC:HGNC:21574"
CDS 18..683
/gene="SAMD3"
/codon_start=1
/product="sterile alpha motif domain containing 3"
/protein_id="AAH29851.1"
/db_xref="GeneID:154075"
/db_xref="HGNC:HGNC:21574"
/translation="METWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQ
QLVKKIGHQAVLMDLIKKYKQNTQGLKSPENPKKAALVMQTEAARDYRDKESSSPARH
GEQMPSFYPAENLDNGLIDQRVLKQRRNVKQILARSKALQWTKSYVLPEFPYDVKCML
AEQKCPDHSMRIRIIEFLQADMTKYLEGSLYPSTQQYNDVVNALLQAHPFLDEDGCGF
AGV"
BASE COUNT 358 a 210 c 237 g 242 t
ORIGIN
1 atttacagga gacagcaatg gaaacctggt cagttgagca ggtctgcagt tggttggtgg
61 agaaaaattt aggagagcta gttcatagat ttcaagagga agaagtaagt ggggccgctc
121 ttcttgcact taatgatcgg atggttcagc aactggtaaa gaaaattggg caccaggctg
181 ttctgatgga tttaattaaa aaatacaagc agaacactca aggactgaag tccccagaaa
241 accccaaaaa ggcagccctg gtcatgcaaa cagaagcagc tcgagattac agggataaag
301 agtcctccag tccagccagg catggggagc agatgccatc tttctatcca gctgaaaacc
361 ttgataatgg actaattgac caaagagtat tgaaacagag aagaaatgtg aaacaaattc
421 tagcaagaag caaagcatta cagtggacga agtcctatgt tttaccagag tttccctatg
481 atgtcaaatg catgttagca gagcagaagt gcccggatca cagcatgagg ataaggatca
541 ttgagtttct ccaggccgac atgactaagt atctggaagg ctcactgtac cccagcaccc
601 agcagtacaa tgacgtggtt aatgccctgc tgcaggccca ccctttcctg gatgaggatg
661 gctgtggctt cgctggagta tagtggcgcg atctcagctc actgcaacct ccgcctcctg
721 ggttcaagca attctctggg gcagcagttc taagctctgg ttgcacatta ggattcctag
781 agattcagat tgaattaatt tgaggatggg attattctaa tgtacaacca cggctgagaa
841 ccactgccgc tgacgtttca acacaaagtt tgctgtttga acctgcctgt ctcctggatt
901 tcaaagacca ctgtcttcat tgcacaacaa tgtgaatata atcaacacta ttgaactgta
961 cctaagaata gttaataaaa aactgagtgt ttaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1021 aaaaaaaaaa aaaaaaaaaa aaaaaaa
//