LOCUS BC029662 4022 bp mRNA linear HTC 01-APR-2004 DEFINITION Homo sapiens chromosome 20 open reading frame 142, mRNA (cDNA clone IMAGE:4933017), with apparent retained intron. ACCESSION BC029662 VERSION BC029662.1 KEYWORDS HTC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4022) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4022) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (06-MAY-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 42 Row: g Column: 21 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis This clone has the following problem: retained intron. FEATURES Location/Qualifiers source 1..4022 /db_xref="H-InvDB:HIT000040858" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4933017" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" BASE COUNT 984 a 928 c 985 g 1125 t ORIGIN 1 cggtggctga cgagatccgg catggagcat ctggagcgct gcgagtggtt gttgcggggg 61 acgctggtgc gggcggccgt gcggcgctac ctgccctggg ccctggtggc ctccatgctg 121 gcgggctccc tcctcaagga gttgtccccg ttgcccgaga gctacctcag caacaagcgc 181 aacgtcctca acgtgtattt tgtcaaagtg gcctgggcct ggacgttctg tctccttctg 241 cctttcattg ccctcaccaa ctaccatctg accggcaagg ctggcttggt cctgcggcgg 301 ctgagcaccc tgcttgtggg cacggccatc tggtacatct gcacctccat cttctccaac 361 atcgaacact acacgggcag ctgctaccag tccccagccc tggagggggt cagaaaggaa 421 caccagagca agcagcagtg ccaccaggaa gggggctttt ggcatggctt tgacatctca 481 ggtcactcct tcctgctgac cttctgcgcc ctcatgattg tagaagagat gtctgtgctg 541 catgaggtga agacggaccg aagccactgc ctccacaccg ccatcaccac cctggttgtg 601 gccctgggca ttctgacttt catctgggtg ttgatgtttc tgtgcacagc tgtttatttc 661 cacaacttgt cccagaaggt gtttggcacc ttgtttggtt tgctgagctg gtacgggaca 721 tacgggtttt ggtatccgaa agccttttcc ccaggacttc ctccccagag ctgtagtttg 781 aatttgaagc aagatagtta caagaaataa aagagtaaca gaggggggac agaaggacaa 841 tggctaatct atttttcaaa tatatatttt gcttagttat ttggctaaat tattgatcct 901 acttcagagg gaaagtgtac caggcagttt tggtgggtgg tgctgaagtc tggggagtga 961 gtttagtctt cagactattc ttggcgacat caccagtgtt gcaagcacca ccattcccag 1021 ttaggcactt tttgtccctg gtaagacttg acctttatct ggaacactcc ttttgtccct 1081 agagtgggga cctaaggctc agcctcccgg gtggctggga ttacaggcat gcatcaccac 1141 accaggctaa ttttgtattt ttagtggaga tggggtttct ccatgttggt caggctggtc 1201 tcgaactcct gaccgcgggt gatccacctg cctcggcctc ccaaagtgct gggattacag 1261 gcatgagcca ccgcgcccgg ctcaggcagg gttctttata aaaacagcct gatgcctgaa 1321 ggacactctc tggttgtaat atttgtttca tccatgaagt gtttaaatat tgcaactgac 1381 ttgcgattag ccaccaaaac aggccctttt agatgcagtg cctctccgac caagtattgg 1441 acgattcata cgtaatggac tatgatcatt ttctgtccat gttttctatt actatatgct 1501 ggtttttttg gagcaataag attacttttt ttctgttcta ttttgagcga atcctttaca 1561 gtttttgata agaactgtga catttgttct ttgttgataa aactcctgaa aataactcac 1621 aaggccagtg ctgcactctg gcacatgtag gttgttttga gggtttgttg gttggttggt 1681 tggctggttg attggttggt tggtttagaa cactaatgta cttgttatga accaaactct 1741 gggcttacag tcttaaattc cacctcatgg ggctgttttc tctgttagca atgaaacctg 1801 ggccaggtgt agtggctcac acctataatc ctggcacttt gggaggctga ggtgggagga 1861 ttactggatc ccaggagttt gagaccagcc tgggcaacat agtgagaccc tggtttctat 1921 aaataaataa gataatcaaa ccagaaagca ggcattttag taacagcctg ttgaatttta 1981 aggtgaatca aggtaatttt gcagaatgcg ttcttgcacc gaaatgtccc tgaccacata 2041 tcagtggtat agactgaaca gtgtgcttca gggtcatgtg ctgagtgcac tgatcactct 2101 gctgtggccc agggcatctg tacctgttgg acaagattat gataattcag aagtgaagta 2161 aaatgcctcc ctctgatggc aaaaagccaa cctgtttgca aaatcaccct tattgaaggg 2221 tggcatggct gtggtccctc cctcctgtta cttgcatcac caaccaaact aaaccaaacc 2281 atacctgggc ctgttcagct ggacttgaaa tcagtttcct ttttctctcc cctttgcagc 2341 acttttcagt ttccagcttt gtcattctgt ggcctttgct gtgacaatgc tgggaagggt 2401 tagaaatcct gtcacctcca tccacaaagg cacagttcca cgccctgtga taagatatcc 2461 cctcttctct cccagactgt ctccttaagc ctttcaaact gagccccttg ctgttggggt 2521 aatcaccctt aaggccgcct tgatgcccct ctctccaatc aagtccaata gtagcattaa 2581 ctgagaagca ctacacctga ctggcttcac tgaagcttaa gtggttgagg atgaatcttc 2641 ggtgtaaaat cttttactat aaggatatat tttaaatatt tcatatccca tcaagttgga 2701 ggttaatttt atccatcaca atgagtcatg atttgttgca cccaaaagga gcagaaacac 2761 aggtgatgag atatgggagg tggcaccatg gtgctttgga ggcgttggta agatgtgacc 2821 ctctgttgcc tatgcccata aaccagtggt gggagtggcc atggagtaga tggcaggggc 2881 ttgttgaagg gattgaaagc tctcctaggc taggcatggt ggctcacacc tgtaatccta 2941 gcactttggg aggctgagat gggaggatca cttgaggttg ggccagccta gccaacatga 3001 taaaaccccg tctcgactaa aaatacaaaa attagccagg tgtggtggta cacgcctgta 3061 atcccagcta ctcgggaggc tggggcagga gaatcgcttg aacccaggag gcagaggttg 3121 cagtgagcta ggatcacgcc actgcactcc agcctgagcg acagagtgag actctgtctc 3181 aaaaaaaaaa aaggctctcc aaagtgtcat gttcagcacc aaaagggaat aggcacaggg 3241 tgaccccaga agttcatttg tgacacttaa atctccagat atttatccca cgtgggtctg 3301 atgcgggctc agcactaaat taactgtatg tggaaagtgt caattgcaga gccttctgta 3361 tcgatgaggc ttccgtcact tgtccatgct tagccccctt gcctcttcct tgggagcatg 3421 ctttctattc ctatgtgaaa cagcctgaca taagtgaaag gatttgggct caagcaaaca 3481 tgagatgtgg gttcatatct tggcaccact cctgatagct gtgtgatcat ggcaaacctc 3541 gttttcatcg tctgtcaggt ggagatgaag agaaatggtg catgtaaagt gctcagcatc 3601 tgtgcttagc aggccatagt ctccctgcct cctttttctt gagtaagcct ttagaacttt 3661 ctgactcctc tagagaaggc agagaaacga atatattttg ggtgccattt ggagtctggg 3721 tcttttgtta aaattgtcct gtattatgtt gaaaagtgtc ggttaccccc aggctctggg 3781 ggcatctgtg atcatagaat actgccatgc ttattttgcc tttctatgtt gagattaatt 3841 cactgacgcc tcattttcca cgtgcatctg tcatagtctg ggtaccagat tgtatttaga 3901 gaatggctct tgccactgtt atgtacacac agatcgtgtg tgtaaacaag caaattaaag 3961 taaactgaga taatgaaatc ccaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 4021 aa //