LOCUS BC029651 3513 bp mRNA linear HUM 22-AUG-2008
DEFINITION Homo sapiens PHD and ring finger domains 1, mRNA (cDNA clone
IMAGE:4339078), partial cds.
ACCESSION BC029651
VERSION BC029651.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3513)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3513)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 52 Row: b Column: 14.
FEATURES Location/Qualifiers
source 1..3513
/db_xref="H-InvDB:HIT000091884"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4339078"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..3513
/gene="PHRF1"
/db_xref="GeneID:57661"
/db_xref="HGNC:HGNC:24351"
/db_xref="MIM:611780"
CDS <1..3244
/gene="PHRF1"
/codon_start=2
/product="PHRF1 protein"
/protein_id="AAH29651.1"
/db_xref="GeneID:57661"
/db_xref="HGNC:HGNC:24351"
/db_xref="MIM:611780"
/translation="AQGPSGNRPQSTGLSCQGRSRTPARTAGAPVRLDLPAAPGAVQA
RNLSNGSVPGFRQSHSPWFNGTNKHTLPLASAASKISSRDSKPPCRSVVPGPPLKPAP
RRTDISELPRIPKIRRDDGGGRRDAAPAHGQSIEIPSACISRLTGREGTGQPGRGTRA
ESEASSRVPREPGVHTGSSRPPAPSSHGSLAPLGPSRGKGVGSTFESFRINIPGNMAH
SSQLSSPGFCNTFRPVDDKEQRKENPSPLFSIKKTKQLRSEVYDPSDPTGSDSSAPGS
SPERSGPGLLPSEITRTISINSPKAQTVQAVRCVTSYTVESIFGTEPEPPLGPSSAMS
KLRGAVAAEGASDTEREEPTESQGLAARLRRPSPPEPWDEEDGASCSTFFGSEERTVT
CVTVVEPEAPPSPDVLQAATHRVVELRPPSRSRSTSSSRSRKKAKRKRVSREHGRTRS
GTRSESRDRSSRSASPSVGEERPRRQRSKAKSRRSSSDRSSSRERAKRKKAKDKSREH
RRGPWGHSRRTSRSRSGSPGSSSYEHYESRKKKKRRSASRPRGRECSPTSSLERLCRH
KHQRERSHERPDRKESVAWPRDRRKRRSRSPSSEHRAREHRRPRSREKWPQTRSHSPE
RKGAVREASPAPLAQGEPGREDLPTRLPALGEAHVSPEVATADKAPLQAPPVLEVAAE
CEPDDLDLDYGDSVEAGHVFDDFSSDAVFIQLDDMSSPPSPESTDSSPERDFPLKPAL
PPASLAVAAIQREVSLMHDEDPSQPPPLPEGTQEPHLLRPDAAEKAEAPSSPDVAPAG
KEDSPSASGRVQEAARPEEVVSQTPLLRSRALVKRVTWNLQESESSAPAEDRAPRAPL
HRPQKPREGAWDMEDVAPTGVRQAFSELPFPSHVLPEPGFPDTDPSQVYSPGLPPAPA
QPSSIPPCALVSQPTVQFILQGSLPLVGCGAAQTLAPVPAALTPASEPASQATAASNS
EEKTPAPRLAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKA
VQKICHSKSGEINPVKVANLVKAYVDKYRHMRRHKKPEAGEEPPTQGAEG"
BASE COUNT 743 a 1128 c 1161 g 481 t
ORIGIN
1 ggcccaaggc ccgtcaggaa acaggccaca gagcacaggg ctcagctgtc aaggcaggtc
61 ccgcaccccc gcccgcaccg cgggggcgcc tgtgaggctg gacttgccag cagcccctgg
121 ggcggttcag gctcggaact tgtcaaatgg gagtgtgcct ggcttcagac agagccacag
181 cccctggttc aacggcacca acaagcacac cttgcccctt gcctctgccg cgtctaagat
241 ctcaagcaga gattctaagc ccccatgtcg cagtgtggtg ccggggcctc ccctgaagcc
301 agcgcccaga agaacagaca tctctgagct acccaggata ccaaagatca ggagagatga
361 cggtggtggc agacgggatg cggccccggc ccacgggcag agcattgaga tccccagtgc
421 ctgcatcagc cgactgactg gcagggaggg caccgggcag ccagggcgag gcacacgggc
481 agagagcgag gccagcagca gggtgccccg ggagcccggg gtgcacacgg gcagctcccg
541 gcccccagcc cccagctccc atggcagttt ggccccactg ggaccatcaa gagggaaagg
601 ggtcgggtcg acctttgaga gcttccggat caatattcct ggaaacatgg cacattccag
661 ccagctctcc agccctggct tctgtaacac gttccggcct gtggacgata aggagcagag
721 gaaggagaac ccctcacccc tcttctccat caagaagacg aagcagctgc ggagcgaggt
781 ctacgaccca tccgacccca ccggctccga ctccagcgcc cctggcagca gccccgagag
841 gtctggcccc ggcctcctgc cctctgagat cacacgaacc atctccatca acagcccgaa
901 ggcccagacg gtgcaggctg tgcgctgcgt cacctcctac acggtggaga gcatctttgg
961 tacagagccc gaaccccctc tcggaccgtc ctccgccatg tccaagctcc ggggtgcagt
1021 ggctgccgag ggggcctctg acacggagcg agaggagccc acagagagcc agggcctggc
1081 tgcccggctg cggaggccat cccccccaga gccctgggat gaggaggatg gggcgtcttg
1141 cagcaccttc tttggctctg aggagcggac ggtgacctgt gtgactgtcg tggagccgga
1201 agccccaccc agcccggacg tgctgcaggc tgccacccac agagtcgtgg agctcaggcc
1261 cccttcccgg tcccgctcca catccagctc ccgcagcagg aagaaggcca agaggaagag
1321 ggtgtccagg gagcacggac ggacgcgctc tgggacgcgc tctgaatcca gggacaggag
1381 ctcgaggtca gcgtcaccat cagtgggtga ggagcgcccc aggaggcagc ggtccaaggc
1441 caagagccgg cggtcctcca gtgaccgctc cagcagccga gagcgagcta agaggaagaa
1501 agccaaggac aagagcaggg agcacaggcg gggcccctgg ggccacagcc ggaggacgtc
1561 ccggtcgcgg tcggggagcc ctggcagctc ttcctatgag cactatgaga gtaggaagaa
1621 gaagaaaagg agatcagcgt ccagacctcg gggaagggag tgctccccca ccagcagcct
1681 ggagaggctc tgcaggcaca agcatcagcg ggaacgcagc cacgagcggc cagacaggaa
1741 ggagagtgtg gcgtggcccc gagaccggag gaagcggagg tcccggtccc caagctcgga
1801 gcacagggca cgggagcaca ggcggcctcg gtcccgtgag aagtggccgc agacccggtc
1861 ccattcccca gagaggaagg gggctgtgag ggaggcttcc ccagcgcccc ttgcacaggg
1921 ggagccaggg cgggaagacc tccccaccag gttgccagcc ttgggggaag cacatgtctc
1981 gccggaggtg gctacggccg acaaggcccc cctgcaggct ccccctgtcc tggaggtggc
2041 agctgagtgt gagccggacg acctggacct ggattatggc gactccgtgg aggccggaca
2101 cgtctttgat gatttctcaa gcgacgccgt tttcatccag ctcgatgaca tgagctcgcc
2161 accttctccc gaaagcacag actcttcccc ggagcgagac ttcccactga agcctgcgtt
2221 gcccccagcc agcctggccg tggccgccat ccagagggag gtgtcattga tgcacgatga
2281 agacccttcg cagcccccac ccctgccaga gggcacccag gagccacatt tgctcaggcc
2341 ggacgcggct gagaaggctg aggcacccag ttccccggat gtggcgcctg cggggaagga
2401 agacagcccc tctgcgagtg ggagggtaca ggaggcagcc cggcctgagg aggtggtttc
2461 gcagaccccc ctgctgcggt ccagagccct ggtgaagcgg gtcacctgga acctgcagga
2521 gtcggagagc agcgcccccg ccgaggacag agccccccgg gcaccacttc acaggccaca
2581 gaagccccga gaaggagcct gggacatgga ggatgtggcc cccacagggg tcaggcaggc
2641 gttctccgag ctgccctttc ccagtcacgt gcttccggaa cccgggttcc cagacacaga
2701 cccctctcag gtttacagcc ccggcctgcc gcctgccccg gcccagccct caagcatccc
2761 accctgcgca ctggtcagcc agcccacggt ccagttcatc cttcagggga gcctgccgct
2821 agtgggctgt ggggcagcac agaccctggc cccagtgccc gctgccctga ccccagcctc
2881 agagccagcc agtcaagcca ctgcagccag caactcggag gagaagaccc cggcccccag
2941 gctagctgcg gagaaaacca agaaggagga gtacatgaag aagctgcaca tgcaggagcg
3001 tgctgtggag gaggtgaagc tggccatcaa gcccttctac cagaagaggg aggtgaccaa
3061 ggaggagtac aaggacatcc tgcgcaaggc cgtgcagaag atctgccaca gcaagagtgg
3121 agagatcaac cccgtgaagg tggccaacct ggtgaaggcg tacgtggaca agtacaggca
3181 catgcgcagg cacaagaaac cagaggccgg ggaggagccg cccacgcagg gggccgaggg
3241 ctgaggccag gcaatcacgg gctatgcccg gggagctgtc gggagtggcg ggaatcgggg
3301 ccatgcccgg ggagctgtcg ggagtggcgg gaatcggggc catgcccggg gagctgtcgg
3361 gagtggcggg aaatgggggg catcaccatg cctgccgtcg ggttcctgcg ctgacacctg
3421 gtctgtgcac ctgtgttgct cacagttgaa aactggacac ttttgtatgt atattataga
3481 gacactgttt ccattctaaa aaaaaaaaaa aaa
//