LOCUS BC029616 2834 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chromosome 9 open reading frame 3, mRNA (cDNA clone
MGC:9508 IMAGE:3877098), complete cds.
ACCESSION BC029616
VERSION BC029616.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2834)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2834)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 14 Row: a Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24432057.
FEATURES Location/Qualifiers
source 1..2834
/db_xref="H-InvDB:HIT000040846"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9508 IMAGE:3877098"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_68"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2834
/gene="C9orf3"
/gene_synonym="AP-O"
/gene_synonym="APO"
/gene_synonym="C90RF3"
/gene_synonym="FLJ14675"
/db_xref="GeneID:84909"
/db_xref="HGNC:HGNC:1361"
CDS 176..2338
/gene="C9orf3"
/gene_synonym="AP-O"
/gene_synonym="APO"
/gene_synonym="C90RF3"
/gene_synonym="FLJ14675"
/codon_start=1
/product="chromosome 9 open reading frame 3"
/protein_id="AAH29616.1"
/db_xref="GeneID:84909"
/db_xref="HGNC:HGNC:1361"
/translation="MDIQLDPARDDLPLMANTSHILVKHYVLDLDVDFESQVIEGTIV
LFLEDGNRFKKQNSSIEEACQSESNKACKFGMPEPCHIPVTNARTFSSEMEYNDFAIC
SKGEKDTSDKDGNHDNQEHASGISSSKYCCDTGNHGSEDFLLVLDCCDLSVLKVEEVD
VAAVPGLEKFTRSPELTVVSEEFRNQIVRELVTLPANRWREQLDYYARCSQAPGCGEL
LFDTDTWSLQIRKTGAQTATDFPHAIRIWYKTKPEGRSVTWTSDQSGRPCVYTVGSPI
NNRALFPCQEPPVAMSTWQATVRAAASFVVLMSGENSAKPTQLWEECSSWYYYVTMPM
PASTFTIAVGCWTEMKMETWSSNDLATERPFSPSEANFRHVGVCSHMEYPCRFQNASA
TTQEIIPHRVFAPVCLTGACQETLLRLIPPCLSAAHSVLGAHPFSRLDVLIVPANFPS
LGMARPSKDKTGHTSDSGASVIKHGLNPEKIFMQVHYLKGYFLLRFLAKRLGDETYFS
FLRKFVHTFHGQLILSQDFLQMLLENIPEEKRLELSVENIYQDWLESSGIPKPLQRER
RAGAECGLARQVRAEVTKWIGVNRRPRKRKRREKEEVFEKLLPDQLVLLLEHLLEQKT
LSPRTLQSLQRTYHLQDQDAEVRHRWCELIVKHKFTKAYKSVERFLQEDQAMGVYLYG
ELMVSEDARQQQLARRCFERTKEQMDRSSAQVVAEMLF"
BASE COUNT 758 a 653 c 720 g 703 t
ORIGIN
1 gtctgcggaa gtggtgaccc gtgggacgcg gctgagacag gagactgaaa ggaaccataa
61 tttgtgacat cagttgtttt ctttgataag cagctattta tgattctgga agattaaggc
121 agataggaaa ccccatctga gattttaata aatccctcaa acaataaacc acatcatgga
181 catacagctg gaccctgcca gagatgacct gcctctcatg gccaacacca gccacatact
241 tgtgaagcac tatgtactgg atttggatgt ggattttgaa agtcaagtca ttgaggggac
301 catagtgctt ttcctcgagg atggaaacag attcaagaaa cagaatagct ctattgagga
361 agcctgccaa tcagaatcaa acaaagcctg caaatttggg atgcctgaac cctgccatat
421 tcccgtgaca aatgcaagga ccttctcatc tgaaatggaa tataatgatt ttgcaatctg
481 tagtaaaggt gaaaaagata cttctgataa agatggtaac catgacaacc aggaacatgc
541 ttctgggatt tctagctcaa agtactgctg tgacacaggg aatcatggga gtgaggattt
601 tttgctagtg ttggactgct gtgatttatc tgtgttaaaa gtcgaggagg tggatgttgc
661 tgctgtgcca ggtctggaaa aatttacaag gtctcctgag ctcacggttg tttctgagga
721 gttcaggaat cagattgtac gtgaacttgt gactttgcct gcaaatcgtt ggagggagca
781 gttagactat tacgctcgct gcagccaggc tcctggctgt ggggaactcc tctttgacac
841 tgacacttgg agcttgcaga taaggaagac aggggctcag acagctactg actttcctca
901 tgctatcagg atatggtaca aaactaaacc tgaagggcga tcggttacat ggacctcaga
961 ccagagtggc aggccatgtg tttatactgt gggatctccc ataaacaaca gggccctttt
1021 tccatgccag gagccacccg ttgccatgtc aacatggcag gctacagttc gagcagctgc
1081 atcttttgtt gttttaatga gtggggaaaa ttctgccaaa ccaacgcagc tttgggaaga
1141 gtgctcaagc tggtattact atgtaactat gccaatgcca gcctccacct tcacaattgc
1201 agtgggatgc tggacagaaa tgaagatgga gacatggtca tcaaatgatt tggcaacaga
1261 gagacccttc tcaccttctg aggccaactt caggcatgtt ggtgtttgca gtcacatgga
1321 atacccctgc cgcttccaga atgcttctgc caccacccag gagatcattc ctcatcgggt
1381 ctttgcccct gtgtgcctca cgggtgcctg ccaagagacc cttctgcggc tgatccctcc
1441 ttgcctctca gcagcacatt ctgttctggg agcacacccg ttctctcggc tggatgttct
1501 catcgtccct gccaactttc caagtctggg gatggccaga cccagtaaag acaaaactgg
1561 ccacacaagt gactcgggag catctgttat caagcatgga cttaatccgg agaagatctt
1621 catgcaggtg cattatttaa agggctactt ccttcttcgg tttcttgcca aaagacttgg
1681 agatgaaacc tatttttcat ttttaagaaa atttgtgcac acatttcatg gacagctgat
1741 tctttcccag gatttccttc aaatgctact ggagaacatt ccagaagaaa aaaggcttga
1801 gctgtctgtt gaaaacatct accaagactg gcttgagagt tccggaatac caaagccgct
1861 gcagagggag cgtcgcgccg gggcggagtg cgggcttgcg cggcaagtgc gcgccgaggt
1921 cacgaaatgg attggagtga accggagacc ccgaaaacgg aagcgcaggg agaaggaaga
1981 ggtgtttgaa aagcttcttc cagaccagct ggtcttgctt ctggagcatc tcttggagca
2041 gaagactctg agcccccgaa ctctgcaaag cctccagagg acataccacc tccaggatca
2101 ggatgcagag gttcgccatc ggtggtgtga actcattgtt aagcacaagt tcacgaaagc
2161 ctacaaaagt gtggagaggt tccttcagga ggatcaggcc atgggtgtgt acctctacgg
2221 ggagctgatg gtgagtgagg acgccagaca gcagcagctc gcccgtaggt gcttcgagcg
2281 gaccaaggag cagatggata ggtcctcagc ccaggtggtg gccgaaatgt tattttaacg
2341 aggaaagacc acagcaagat tctttcattc gtctcctcct agcctggggg accaggctcg
2401 aactgaccct ggacatcaaa ggagggatta tgtggctgct aaagccatcg gcccacagcc
2461 ctgttcacgt cttggtgctt ctctttccca gaggctggtc ccagccaggc acacacaaaa
2521 ggcagattct cgtaaacgca gcctccctcc ctggaggctg cctcctgccc tggatctgga
2581 gtggagctgc tctgagattt tgagttcttc tgcagagatg attaaatata tccaagagac
2641 attggaaaac ctgctgaaca ttttacattg gtctgctcag cacatggctg gatgcggata
2701 tttctataat tccagaaagt cacacagctc ctctgtatga gaccagtggg cgccatttaa
2761 aagaacagga tgagaatcta agatatatta ttaataaatg taatggattt tttttttgta
2821 aaaaaaaaaa aaaa
//