LOCUS BC029600 1841 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens TNF receptor-associated factor 5, mRNA (cDNA clone
MGC:39780 IMAGE:5295897), complete cds.
ACCESSION BC029600
VERSION BC029600.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1841)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1841)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: m Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22027626.
FEATURES Location/Qualifiers
source 1..1841
/db_xref="H-InvDB:HIT000040840"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39780 IMAGE:5295897"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1841
/gene="TRAF5"
/gene_synonym="MGC:39780"
/gene_synonym="RNF84"
/db_xref="GeneID:7188"
/db_xref="HGNC:HGNC:12035"
/db_xref="MIM:602356"
CDS 61..1734
/gene="TRAF5"
/gene_synonym="MGC:39780"
/gene_synonym="RNF84"
/codon_start=1
/product="TNF receptor-associated factor 5"
/protein_id="AAH29600.1"
/db_xref="GeneID:7188"
/db_xref="HGNC:HGNC:12035"
/db_xref="MIM:602356"
/translation="MAYSEEHKGMPCGFIRQNSGNSISLDFEPSIEYQFVERLEERYK
CAFCHSVLHNPHQTGCGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVFKDNCCKRE
VLNLYVYCSNAPGCNAKVILGRYQDHLQQCLFQPVQCSNEKCREPVLRKDLKEHLSAS
CQFRKEKCLYCKKDVVVINLQNHEENLCPEYPVFCPNNCAKIILKTEVDEHLAVCPEA
EQDCPFKHYGCAVTDKRRNLQQHEHSALREHMRLVLEKNVQLEEQISDLHKSLEQKES
KIQQLAETIKKLEKEFKQFAQLFGKNGSFLPNIQVFASHIDKSAWLEAQVHQLLQMVN
QQQNKFDLRPLMEAVDTVKQKITLLENNDQRLAVLEEETNKHDTHINIHKAQLSKNEE
RFKLLEGTCYNGKLIWKVTDYKMKKREAVDGHTVSIFSQSFYTSRCGYRLCARAYLNG
DGSGRGSHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNIMETFKPDPNSSSF
KRPDGEMNIASGCPRFVAHSVLENAKNAYIKDDTLFLKVAVDLTDLEDL"
BASE COUNT 560 a 376 c 450 g 455 t
ORIGIN
1 agtgcaggga tgtgcagatg agtgggctgt ggggtgtcct gctcacggtt tcatggatga
61 atggcttatt cagaagagca taaaggtatg ccctgtggtt tcatccgcca gaattccggc
121 aactccattt ccttggactt tgagcccagt atagagtacc agtttgtgga gcggttggaa
181 gagcgctaca aatgtgcctt ctgccactcg gtgcttcaca acccccacca gacaggatgt
241 gggcaccgct tctgccagca ctgcatcctg tccctgagag aattaaacac agtgccaatc
301 tgccctgtag ataaagaggt catcaaatct caggaggttt ttaaagacaa ttgttgcaaa
361 agagaagtcc tcaacttata tgtatattgc agcaatgctc ctggatgtaa tgccaaggtt
421 attctgggcc ggtaccagga tcaccttcag cagtgcttat ttcaacctgt gcagtgttct
481 aatgagaagt gccgggagcc agtcctacgg aaagacctga aagagcattt gagtgcatcc
541 tgtcagtttc gaaaggaaaa atgcctttat tgcaaaaagg atgtggtagt catcaatcta
601 cagaatcatg aggaaaactt gtgtcctgaa tacccagtat tttgtcccaa caattgtgcg
661 aagattattc taaaaactga ggtagatgaa cacctggctg tatgtcctga agctgagcaa
721 gactgtcctt ttaagcacta tggctgtgct gtaacggata aacggaggaa cctgcagcaa
781 catgagcatt cagccttacg ggagcacatg cgtttggttt tagaaaagaa tgtccaatta
841 gaagaacaga tttctgactt acacaagagc ctagaacaga aagaaagtaa aatccagcag
901 ctagcagaaa ctataaagaa acttgaaaag gagttcaagc agtttgcaca gttgtttggc
961 aaaaatggaa gcttcctccc aaacatccag gtttttgcca gtcacattga caagtcagct
1021 tggctagaag ctcaagtgca tcaattatta caaatggtta accagcaaca aaataaattt
1081 gacctgagac ctttgatgga agcagttgat acagtgaaac agaaaattac cctgctagaa
1141 aacaatgatc aaagattagc cgttttagaa gaggaaacta acaaacatga tacccacatt
1201 aatattcata aagcacagct gagtaaaaat gaagagcgat ttaaactgct ggagggtact
1261 tgctataatg gaaagctcat ttggaaggtg acagattaca agatgaagaa gagagaggcg
1321 gtggatgggc acacagtgtc catcttcagc cagtccttct acaccagccg ctgtggctac
1381 cggctctgtg ctagagcata cctgaatggg gatgggtcag ggagggggtc acacctgtcc
1441 ctatactttg tggtcatgcg aggagagttt gactcactgt tgcagtggcc attcaggcag
1501 agggtgaccc tgatgcttct ggaccagagt ggcaaaaaga acattatgga gaccttcaaa
1561 cctgacccca atagcagcag ctttaaaaga cctgatgggg agatgaacat tgcatctggc
1621 tgtccccgct ttgtggctca ttctgttttg gagaatgcca agaacgccta cattaaagat
1681 gacactctgt tcttgaaagt ggccgtggac ttaactgacc tggaggatct ctagtcactg
1741 ttatggggtg ataagaggac ttcttggggc cagaactttg gaggagagca catttgatta
1801 tcatattgac ctggatttag acccaaaaaa aaaaaaaaaa a
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