LOCUS BC029414 1310 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens PRP40 pre-mRNA processing factor 40 homolog A (S.
cerevisiae), mRNA (cDNA clone IMAGE:4733897), partial cds.
ACCESSION BC029414
VERSION BC029414.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1310)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1310)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 41 Row: n Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..1310
/db_xref="H-InvDB:HIT000091782"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4733897"
/tissue_type="Liver"
/clone_lib="NIH_MGC_76"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..>1310
/gene="PRPF40A"
/gene_synonym="FBP-11"
/gene_synonym="FBP11"
/gene_synonym="FLAF1"
/gene_synonym="HIP10"
/gene_synonym="HYPA"
/gene_synonym="NY-REN-6"
/db_xref="GeneID:55660"
/db_xref="HGNC:HGNC:16463"
CDS 68..>1310
/gene="PRPF40A"
/gene_synonym="FBP-11"
/gene_synonym="FBP11"
/gene_synonym="FLAF1"
/gene_synonym="HIP10"
/gene_synonym="HYPA"
/gene_synonym="NY-REN-6"
/codon_start=1
/product="PRPF40A protein"
/protein_id="AAH29414.1"
/db_xref="GeneID:55660"
/db_xref="HGNC:HGNC:16463"
/translation="MRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHGMMP
QMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASGAKS
MWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNS
QTKESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSTAPVP
TTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVSGTVPVVPEPEV
TSIVATVVDNENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQETVADFTPKK
EEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKL
SEKKQAFNAYKVQKKKKKKKKK"
BASE COUNT 442 a 286 c 301 g 281 t
ORIGIN
1 actcagatcg cttcttgttg gtatgtgtag cggcagtggc cgccggcgga gcagtctgag
61 cccgacgatg aggccgggga cgggagctga gcgtggaggc ctcatgatgg ggcaccctgg
121 catgcattat gccccaatgg gaatgcaccc tatgggtcag agagcgaata tgcctcctgt
181 acctcatgga atgatgccgc agatgatgcc ccctatggga gggccaccaa tgggacaaat
241 gcctggaatg atgtcgtcag taatgcctgg aatgatgatg tctcatatgt ctcaggcttc
301 catgcagcct gccttaccgc caggagtaaa tagtatggat gtagcagcag gtacagcatc
361 tggtgcaaaa tcaatgtgga ctgaacataa atcacctgat ggaaggactt actactacaa
421 cactgaaacc aaacagtcta cctgggagaa accagatgat cttaaaacac ctgctgagca
481 actcttatct aaatgcccct ggaaggaata caaatcagat tctggaaagc cttactatta
541 taattctcaa acaaaagaat ctcgctgggc caaacctaaa gaacttgagg atcttgaagg
601 ataccagaat accattgttg ctggaagtct tattacaaaa tcaaacctgc atgcaatgat
661 caaagctgaa gaaagcagta agcaagaaga gtgcaccaca acatcaacag ccccagtccc
721 tacaacagaa attccgacca caatgagcac catggctgct gccgaagcag cagctgctgt
781 tgttgcagca gcagcagcgg cagcagcagc agcagctgca gccaatgcta atgcttccac
841 ttctgcttct aatactgtca gtggaactgt tccagttgtt cctgagcctg aagttacttc
901 cattgttgct actgttgtag ataatgagaa tacagtaact atttcaactg aggaacaagc
961 acaacttact agtacccctg ctattcagga tcaaagtgtg gaagtatcca gtaatactgg
1021 agaagaaaca tctaagcaag aaactgtagc tgattttact cccaaaaaag aagaggagga
1081 gagccaacca gcaaagaaaa catacacttg gaatacaaag gaagaggcaa agcaagcttt
1141 taaagaatta ttgaaagaaa agcgggtacc atcgaatgct tcatgggagc aggctatgaa
1201 aatgattatt aatgatccac gatacagtgc tttggcaaag ttaagtgaaa aaaagcaagc
1261 ctttaatgcc tataaagtcc aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//