LOCUS BC029268 1818 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ATG10 autophagy related 10 homolog (S. cerevisiae),
mRNA (cDNA clone MGC:34134 IMAGE:4521833), complete cds.
ACCESSION BC029268
VERSION BC029268.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1818)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1818)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 52 Row: c Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33589825.
FEATURES Location/Qualifiers
source 1..1818
/db_xref="H-InvDB:HIT000040717"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34134 IMAGE:4521833"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1818
/gene="ATG10"
/gene_synonym="DKFZP586I0418"
/gene_synonym="FLJ13954"
/gene_synonym="pp12616"
/db_xref="GeneID:83734"
/db_xref="HGNC:HGNC:20315"
CDS 265..927
/gene="ATG10"
/gene_synonym="DKFZP586I0418"
/gene_synonym="FLJ13954"
/gene_synonym="pp12616"
/codon_start=1
/product="ATG10 autophagy related 10 homolog (S.
cerevisiae)"
/protein_id="AAH29268.1"
/db_xref="GeneID:83734"
/db_xref="HGNC:HGNC:20315"
/translation="MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMC
KIHFQIKNGSVMSHLGASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLY
SCSYQVPVLYFRASFLDGRPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPF
FVLHPCKTNEFMTPVLKNSQKINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERN
VP"
BASE COUNT 507 a 383 c 451 g 477 t
ORIGIN
1 acctgactga aggaggccgc ggacctgact gaaggaggcc acggccactt ctggttggcc
61 tcggggcgcg ctggctcggc tcttcctccg ccctcgaggc ccccgcagtc ccatcattca
121 gttccgtagg gtcaccggcg cggcagtggc ctcgcagggc gctgggtccc tctccccagc
181 tctcctcccc ctggccgcgt cgccccgccc tcgccgggct gggctgcggg gtcaggggcc
241 gagcggagag ggttatcatt taacatggaa gaagatgagt tcattggaga aaaaacattc
301 caacgttatt gtgcagaatt cattaaacat tcacaacaga taggtgatag ttgggaatgg
361 agaccatcaa aggactgttc tgatggctac atgtgcaaaa tacactttca aattaagaat
421 gggtctgtga tgtcacatct aggagcatct acccatggac agacatgtct tcccatggag
481 gaggctttcg agctaccctt ggatgattgt gaagtgattg aaactgcagc agcgtccgaa
541 gtgattaaat atgagtatca tgtcttatat tcctgtagct accaagtgcc tgtactttac
601 tttagggcaa gctttttaga tgggagacct ttaactctga aggacatatg ggaaggagtt
661 catgagtgct ataagatgcg actgctacag ggaccatggg acactattac gcaacaggaa
721 catccaatac ttgggcaacc cttttttgta cttcatccct gcaagacgaa tgaattcatg
781 actcctgtat taaagaattc tcagaaaatc aataagaatg tcaactatat cacatcatgg
841 ctgagcattg tagggccagt tgttgggctg aatctacctc tgagttatgc caaagcaacg
901 tctcaggatg aacgaaatgt cccttaacaa gattcttcta ttgagtttag gaattgcggc
961 acgaagaatg ccaagagttt acctggccag ccctggcttt aataggactg ataccatgga
1021 atatttcatc tcaccaagat gtgacatgga ttatttttcc cttggacaca aatgtctaca
1081 gcaactggtg tttgataggc tgaatgttta gaagaaacac ttcaaaggga tacatcatgg
1141 ccaggcatgg tggctcacac ctgtaatcca agcactttgg gaggccaagg tgggagcatc
1201 acttgatcct gggagttcga gaccagcctg ggcaacatgg tgaaaccctg tcggtacaaa
1261 aaaatacaaa aatttgcctg tttatggtgg tgtgttcctg tagtcccagc tccccaggag
1321 gctgaggtgg gaggttggct ttaacccagg aggcagaggt tgcagtgagc tgagactgtg
1381 ccactgcagt ccagcctggg tgacagagcc agacactgtc tcgggaaaaa aaaaaaaaaa
1441 gacacatcac tataaatagc aaaaaaacaa atctaactta ttaatactag gaataccaac
1501 attattaggg cacttgcagg ttattctttt ctaggccaag tacttcactt ccatttgtct
1561 gacatggaga ttgagggaga aatgtatttg tgtgttcatt ttaatgtaag atatataaaa
1621 attaaattac tggatttacc tgtccctgaa actggtgtta taaacatgac ctatcttaag
1681 tgattttccc acaatcaaac tcaggaacaa tagattattt ctgttttact ccaaaagaga
1741 gagagagagt gagtgtgagt gtgtgtgtgt gtgtgtgtgt atgtgtgggt gtttgtgtag
1801 atagttgtaa aaaaaaaa
//