LOCUS BC029141 1692 bp mRNA linear HUM 06-OCT-2003 DEFINITION Homo sapiens nephrosis 2, idiopathic, steroid-resistant (podocin), mRNA (cDNA clone MGC:34362 IMAGE:5187188), complete cds. ACCESSION BC029141 VERSION BC029141.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1692) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1692) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (01-MAY-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 50 Row: g Column: 24 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 7657614. FEATURES Location/Qualifiers source 1..1692 /db_xref="H-InvDB:HIT000040693" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:34362 IMAGE:5187188" /tissue_type="Colon, Kidney, Stomach, adult, whole pooled" /clone_lib="NIH_MGC_116" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1692 /gene="NPHS2" /gene_synonym="PDCN" /gene_synonym="SRN1" /db_xref="GeneID:7827" /db_xref="MIM:604766" CDS 89..1036 /gene="NPHS2" /gene_synonym="PDCN" /gene_synonym="SRN1" /codon_start=1 /product="NPHS2 protein" /protein_id="AAH29141.1" /db_xref="GeneID:7827" /db_xref="MIM:604766" /translation="MERRARSSSRESRGRGGRTPHKENKRAKAERSGGGRGRQEAGPE PSGSGRAGTPGEPRAPAATVVDVDEVRGSGEEGTEVVALLESERPEEGTKSSGLGACE WLLVLISLLFIIMTFPFSIWFCVKVVQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLD TYHKVDLRLQTLEIPFHEVALDSVTCIWGIKVERIEIKDVRLPAGLQHSLAVEAEAQR QAKVRMIAAEAEKAASESLRMAAEILSGTPAAVQLRYLHTLQSLSTEKPSTVVLPLPF DLLNCLSSPSNRTQGSLPFPSPSKPVEPLNPKKKDSPML" misc_feature 458..613 /gene="NPHS2" /gene_synonym="PDCN" /gene_synonym="SRN1" /note="Band_7; Region: SPFH domain / Band 7 family. This family includes proteins with high blast scores to known Band 7 protein: HflC from E. coli, HflK from E. coli, Prohibitin family members" /db_xref="CDD:pfam01145" BASE COUNT 413 a 443 c 438 g 398 t ORIGIN 1 cgcggacccg cagcgactcc acagggactg cgctcccgtg cccctagcgc tcccgcgctg 61 ctgctccagc cgcccggcag ctctgaggat ggagaggagg gcgcggagct cctccaggga 121 gtcccgcggg cgaggcggca ggactccgca caaggagaac aagagggcaa aggccgagag 181 gagcggcggg ggccgcgggc gccaggaggc tgggcccgag ccgtcgggct ccggacgggc 241 ggggaccccg ggggagcccc gagcgcccgc cgccacggtg gtggacgtgg atgaggtccg 301 aggctccggc gaggagggca ccgaggtggt ggcgctgttg gagagcgagc ggcccgagga 361 aggtaccaaa tcctctggct taggggcctg tgagtggctt cttgtcctca tttccctgct 421 cttcatcatc atgaccttcc ctttttccat ctggttctgc gtaaaggttg tacaagagta 481 tgaaagagta attatattcc gactgggaca tctgcttcct ggaagagcca aaggccctgg 541 tcttttcttt tttttgccct gcctggatac ctaccacaag gttgaccttc gtctccaaac 601 tctggagata ccttttcatg aggttgcctt ggattcagtg acctgtattt ggggaatcaa 661 agtggagaga atagaaatta aagatgtgag gttgccagct gggcttcagc actcactggc 721 tgtggaggct gaagcgcaaa gacaagccaa agtgcggatg attgctgcag aagcggaaaa 781 ggctgcttct gagtccctga ggatggcagc tgagattctg tcaggcaccc ctgctgccgt 841 tcagcttcga tacctccaca cccttcagtc tctgtccaca gagaagcctt ccactgtggt 901 tttacctttg ccatttgacc tgctgaattg cctgtcttct cccagcaaca gaactcaggg 961 aagcctcccc ttcccaagtc cttccaaacc tgttgagcca ctaaatccta aaaagaaaga 1021 ctctcccatg ttataggaag gatggggcat aatgtgactg taaaggggcc tgccatagaa 1081 aagtcacatg cctgagggag acactctgtc ctcattccct gcccttcctt tggttgccat 1141 atggaatggc catggaatgc acgaagtcac aatgcaccat ccatgagaag acagtgaaat 1201 gatgtaatga cagagaaggc agacaacatg tttccgtgac tcatctagtc agagcaatta 1261 tgggaaacag ctttggtcaa cattctactt tggaaagaat tttgagtcta gatgtggtta 1321 aattttgact tctgggaact tggttcagat gtccctttca ctgtatgtcc tctgacccct 1381 ttggcaaggt tgccacagct cccacagccc ttcctacaag cacctatcat tgggcttgtc 1441 acactctatt gctcttctgt cccgaagatg cagtcttctc tccaatgata ctaccaagtc 1501 ttagttttcc tcaaccacac tcaatctttt tgctccaccc tgaattcctc acacctaacc 1561 ctgatagtta cctaaagtga cacttaaatg tttcagagtg aatgcaaaaa agagagatgt 1621 acttggagtc ggatatacaa tttatcccta attaaagcat ttaaaaggaa aaaaaaaaaa 1681 aaaaaaaaaa aa //