LOCUS BC028917 1181 bp mRNA linear HUM 13-JUN-2005
DEFINITION Homo sapiens zinc finger, C3HC-type containing 1, mRNA (cDNA clone
IMAGE:4707030), complete cds.
ACCESSION BC028917
VERSION BC028917.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1181)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1181)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 29 Row: j Column: 22
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1181
/db_xref="H-InvDB:HIT000040646"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4707030"
/tissue_type="Breast, mammary adenocarcinoma."
/clone_lib="NIH_MGC_87"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1181
/gene="ZC3HC1"
/gene_synonym="1110054L24Rik"
/gene_synonym="HSPC216"
/gene_synonym="NIPA"
/db_xref="GeneID:51530"
CDS 148..786
/gene="ZC3HC1"
/gene_synonym="1110054L24Rik"
/gene_synonym="HSPC216"
/gene_synonym="NIPA"
/codon_start=1
/product="ZC3HC1 protein"
/protein_id="AAH28917.1"
/db_xref="GeneID:51530"
/translation="MTDLDASFGLTSSPIPGLEGRPERLPLVPESPRRMMTRSQDATF
SPGSEQAEKSPGPIVSRTRSWDSSSPVDRPEPEAASPTTRTRPVTRSMGTGDTPGLEV
PSSPLRKAKRARLCSSSSSDTSSRSFFDPTSQHRDWCPWVNITLGKESRENGGTEPDA
SAPAEPGWKAVLTILLAHKQSSQPAETDSMSLSEKSRKVFRIFRQWESLCSC"
BASE COUNT 295 a 309 c 303 g 274 t
ORIGIN
1 atccaagtcc acgtcactgc ctgtattctc tctgtgtgtg gctgggcgtg tagttcctct
61 ttggaatcca tgcagctctc cctgataaca tgttcacaat gtatgaggaa ggtggggctc
121 tggggcttcc agcagattga atcgtccatg actgacctgg atgcatcctt tggcctgacc
181 agctccccaa tcccaggcct tgaggggcga ccagagcgct tacctctggt gcctgaatct
241 cctcggagga tgatgacccg gagccaggat gccactttct ccccaggctc agagcaggct
301 gaaaagagcc ctggtcccat tgtctctcga actcggagct gggactcttc cagtcctgtt
361 gaccgtcctg agccagaggc tgctagcccc accaccagaa ctcgcccagt gacccgaagc
421 atgggaacag gagacacccc tggcctggag gtaccatcta gccctctgcg gaaagccaag
481 cgagctcgcc tctgctcctc cagcagttcg gacacatctt cccgaagctt ctttgatccc
541 acctctcagc atagagactg gtgcccttgg gtgaatatca cacttggcaa agaaagcagg
601 gagaatggtg gaactgaacc agatgccagc gccccagcag agccaggctg gaaagcagtg
661 ctgaccatcc tcttggcgca caaacagtct agccagccag ctgaaacgga ctccatgagt
721 ctctctgaga aatcaaggaa agtattccga atatttcggc agtgggaatc tctgtgctca
781 tgctgaagat actccagcgc cttcctggag atagctggaa tgagagtgac tttttgaaaa
841 attaaggctg agttcctttc ggtcagctga cactaagttt ttcctgttct gggttaatca
901 taaggagccc cctgccatag caaaggcagt gagtgtcaac tatctgcatc tggctgagag
961 agacccgttt cctttcaggg atgtggacag ggtaagggca gcaagcatgg ttctgttaaa
1021 ggagtgtggg gttaacagac tagaaggaag actaaggacc tgaccaccca tttcagcatc
1081 ttcaatgtgg agcagtgttc tgaggactct tctatcctag gactatgaca gtgtgtatta
1141 ataaaatatt tgctaagatt ctcaaaaaaa aaaaaaaaaa a
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