LOCUS BC028728 1683 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens cation channel, sperm associated 2, mRNA (cDNA clone
IMAGE:4828636), complete cds.
ACCESSION BC028728
VERSION BC028728.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1683)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1683)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: b Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 26051221
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1683
/db_xref="H-InvDB:HIT000040630"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4828636"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1683
/gene="CATSPER2"
/gene_synonym="MGC33346"
/db_xref="GeneID:117155"
/db_xref="HGNC:HGNC:18810"
/db_xref="MIM:607249"
CDS 221..820
/gene="CATSPER2"
/gene_synonym="MGC33346"
/codon_start=1
/product="cation channel, sperm associated 2"
/protein_id="AAH28728.1"
/db_xref="GeneID:117155"
/db_xref="HGNC:HGNC:18810"
/db_xref="MIM:607249"
/translation="MAAYQQEEQMQLPRADAIRSRLIDTFSLIEHLQGLSQAVPRHTI
RKLLDPSRQKKLVLGDQHQLVRFSIKPQRIEQISHAQRLLSRLHVRCSQRPPLSLWAG
WVLECPLFKNFIIFLVFLNTIILMVEIELLESTNTKLWPLKLTLEVAAWFILLIFILE
ILLKWLSNFSVFWKSAWNVFDFVVTMLVRIEILRVRLVG"
BASE COUNT 445 a 351 c 432 g 455 t
ORIGIN
1 agcgggctcc gcatggtcct gggctgtggg taggggctag ggccgggtcc cggggtgagc
61 cgaaacctgg gggtcgagcg gggcggggaa tggggcgcag tgaggctggg agccggccct
121 gagctcgtct tgcatagggg tagccaggct cggggcacct gagctggagg cggaagcgtg
181 aaataaggac tgagtgggca aagagaacct gggctgagac atggccgctt accaacaaga
241 agagcagatg cagcttcccc gagctgatgc cattcgttca cgtctcatcg atactttctc
301 tctcattgag catttgcaag gcttgagcca agctgtgccg cggcacacta tcaggaagtt
361 acttgatcct tcccgccaga agaaacttgt attgggagat caacaccagc tagtgcgttt
421 ctctataaag cctcagcgta tagaacagat ttcacatgcc cagaggctgt tgagcaggct
481 tcatgtgcgc tgcagtcaga ggccacctct ttctttgtgg gccggatggg tccttgagtg
541 tcctctcttc aaaaacttca tcatcttcct ggtctttttg aatacgatca tattgatggt
601 tgaaatagaa ttgctggaat ccacaaatac caaactatgg ccattgaagc tgaccttgga
661 ggtggcagct tggtttatct tgcttatttt catcctggag atccttctta agtggctatc
721 caacttttct gttttctgga agagtgcctg gaatgtcttt gactttgttg ttaccatgtt
781 ggtaaggata gagatcctga gggttcgttt agtgggatga agaatgtgcc taggtgaatc
841 gaaagaacaa gttaacatga taataggaag aaacaaaaat ttacttaact tctttctttt
901 gatttttttt ccctaaaact aaacatcaat cattgcagga gttgttggta ttaggagcaa
961 agtagactaa ctacaacatc aatgccaaca agagcatctg ccggttactg agcacttact
1021 aagtgccaag cattatttta agtgttttcc ttacattatc tcatttatgc tccacaacaa
1081 cccaattaaa taaccatgaa ttttatcccc ctttttatat ctgaacaagt ttaagtatag
1141 tgtttaagca acttaatata gaaaggctga atagtaagca cttctcagag aatgctattc
1201 aagggataac gcccagggaa caatgaagag gataagatga agaagctgca attctgcctg
1261 ggtgccttgg ggtgtatttt acttataacc tgtgtgtttt ccacagtccc tgcttcccga
1321 ggttgtggta ttggtagggg taacaggcca atcggtgtgg cttcagcttc tgaggatctg
1381 ccgggtgctg aggtctctca aactccttgc acaattccgt caaattcaaa ttattatttt
1441 ggtcctggtc agggccctca aggtgatttg actgttgcaa gctaaagcag ggggcaaggt
1501 agataaatgt gagggcttaa catagaatat gaaacaaatt ggccgggtgc ggtggctcac
1561 gcctgtaatc ccagcacttt gggaagccga gggggatggg tcatgaggtc aggagttcga
1621 gaccagcctg accaacatgg tgaaaccctg tctctactaa aaataccaaa aaaaaaaaaa
1681 aaa
//