LOCUS BC028626 3450 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens trinucleotide repeat containing 6B, mRNA (cDNA clone
MGC:33627 IMAGE:4826787), complete cds.
ACCESSION BC028626
VERSION BC028626.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3450)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3450)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC028626.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: o Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..3450
/db_xref="H-InvDB:HIT000040594"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33627 IMAGE:4826787"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3450
/gene="TNRC6B"
/gene_synonym="KIAA1093"
/db_xref="GeneID:23112"
CDS 236..3325
/gene="TNRC6B"
/gene_synonym="KIAA1093"
/codon_start=1
/product="TNRC6B protein"
/protein_id="AAH28626.1"
/db_xref="GeneID:23112"
/translation="MQTNEGEVSEESSSKVEQEDFVMEGHGKTPPPGEESKQEKEQER
EEQLMEDKKRKKEDKKKKEATQKVTEQKTKVPEVTKPSLSQPTAASPIGSSPSPPVNG
GNNAKRVAVPNGQPPSAARYMPREVPPRFRCQQDHKVLLKRGQPPPPSCMLLGGGAGP
PPCTAPGANPNNAQVTGALLQSESGTAPVWSKSTPPAPDNGTSAWGEPNESSPGWGEM
DDTGASTTGWGNTPANAPNAMKPNSKSMQDGWGESDGPVTGARHPSWEEEEDGGVWNT
TGSQGSASSHNSASWGQGGKKQMKCSLKGGNNDSWMNPLAKQFSNMGLLSQTEDNPSS
KMDLSVGSLSDKKFDVDKRAMNLGDFNDIMRKDRSGFRPPNSKDMGTTDSGPYFEKGG
SHGLFGNSTAQSRGLHTPVQPLNSSPSLRAQVPPQFISPQVSASMLKQFPNSGLSPGL
FNVGPQLSPQQIAMLSQLPQIPQFQLACQLLLQQQQQQQLLQNQRKISQAVRQQQEQQ
LARMVSALQQQQQQQQRQPGMKHSPSHPVGPKPHLDNMVPNALNVGLPDLQTKGPIPG
YGSGFSSGGMDYGMVGGKEAGTESRFKQWTSMMEGLPSVATQEANMHKNGAIVAPGKT
RGGSPYNQFDIIPGDTLGGHTGPAGDSWLPAKSPPTNKIGSKSSNASWPPEFQPGVPW
KGIQNIDPESDPYVTPGSVLGGTATSPIVDTDHQLLRDNTTGSNSSLNTSLPSPGAWP
YSASDNSFTNVHSTSAKFPDYKSTWSPDPIGHNPTHLSNKMWKNHISSRNTTPLPRPP
PGLTNPKPSSPWSSTAPRSVRGWGTQDSRLASASTWSDGGSVRPSYWLVLHNLTPQID
GSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFA
TDDEVSRFLAQAQPPTPAATPSAPAAGWQSLETGQNQSDPVGPALNLFGGSTGLGQWS
SSAGGSSGADLAGASLWGPPNYSSSLWGVPTVEDPHRMGSPAPLLPGDLLGGGSDSI"
BASE COUNT 906 a 945 c 901 g 698 t
ORIGIN
1 cggcccgcgg aggcgcgtcc gcccctggct ggcggtggca gagggaggcg tcaggcctcg
61 gatcctcggg tccctgcgca gcgtcccggc ctgtgtgcag gacctgcgtg acaagggttg
121 tggttttttg cactgaatgt aacctagact catcttcacg ggcttgtgtt gccccaggta
181 ctgtcaaagg cagtattttt gtgtttctgc agagttttgc acaaaatctg ttcccatgca
241 aaccaatgag ggagaagtat cggaagaaag cagttccaag gtggaacagg aggattttgt
301 aatggaaggg catggcaaga ctccacctcc tggtgaagaa agcaaacaag agaaggagca
361 agaaagggaa gaacagttaa tggaagacaa gaaaaggaag aaagaggata aaaagaaaaa
421 agaagccact cagaaggtca cggaacaaaa aaccaaagtg cccgaagtga cgaaaccaag
481 tttaagccaa ccaacggccg ccagcccaat tggcagctct ccatcgccac cagtcaatgg
541 tggcaacaat gccaaaaggg tggcagtgcc gaacggacaa ccgccaagcg ccgcccgcta
601 catgcctcgg gaggtgccgc cgcgattccg ttgccagcag gaccacaaag tgttactaaa
661 acgtgggcag ccccctccac cgtcctgcat gctccttggg ggtggggcag ggcctcctcc
721 ctgcacagca cctggagcaa acccaaacaa cgcacaagtg acaggagcgc tgctgcagag
781 tgagagtggg actgcgccag tctggagcaa aagcacacca cctgctccag ataatggtac
841 ttccgcttgg ggtgagccaa atgaaagcag tcctgggtgg ggcgagatgg atgatacggg
901 agcatcgacc acaggctggg ggaacacgcc cgccaacgct cccaatgcca tgaagcctaa
961 ttccaaatct atgcaagacg gctgggggga gagtgacggg ccagtcacag gagctcgcca
1021 tcccagctgg gaagaggagg aggatggagg agtctggaac accactggct ctcagggcag
1081 tgcttcctcc cacaactcag caagctgggg acaaggagga aagaaacaaa tgaagtgctc
1141 actcaaagga ggaaacaatg attcatggat gaatcctctt gccaaacagt tttcaaatat
1201 gggattgctg agtcagactg aagataatcc aagcagcaaa atggatttgt ctgtaggaag
1261 cctttcagat aaaaaatttg atgtggacaa gcgagcgatg aatctcgggg attttaatga
1321 tatcatgagg aaggatcgat ctgggttccg tccacctaat tccaaagaca tgggaaccac
1381 agatagtggg ccttattttg agaagggcgg tagtcatggt ttgtttggaa acagcacagc
1441 acaatcgaga ggtctgcaca cacccgtgca gccactaaat tcttctccca gtctccgggc
1501 gcaagtgcct ccccagttta tttcccccca ggtttctgcc tcaatgctca agcagtttcc
1561 caacagtggc ctgagtccag gtcttttcaa tgtggggccc cagttatctc ctcaacaaat
1621 tgccatgctg agccagcttc cacaaattcc ccagtttcag ttggcatgtc agcttctctt
1681 gcagcagcag caacagcagc agttgttaca gaaccagaga aagatttctc aagctgtacg
1741 ccaacagcaa gagcagcagc tggctcgaat ggtgagtgca ctgcagcagc agcagcagca
1801 gcagcagagg cagccaggca tgaagcactc gccctctcat cctgttgggc ccaagccgca
1861 tctggacaac atggtaccca acgcattgaa tgtggggctc ccagaccttc aaaccaaagg
1921 gccaatacct ggatatggtt ctggcttcag ctctggcggc atggactatg gcatggttgg
1981 tgggaaggag gctggaaccg agtctcgctt taaacagtgg acctccatga tggaggggct
2041 gccctctgta gccacacagg aagccaatat gcacaaaaat ggcgctatag tggcccctgg
2101 taaaacccgg ggagggtcac cgtacaacca gtttgatatc atccctggtg acacactggg
2161 tggccatacg ggtcctgctg gtgatagctg gttacctgcc aaatctccac caacaaataa
2221 aatcggaagt aaatccagca atgccagttg gcctccagaa ttccaaccag gagtgccatg
2281 gaaaggtatc caaaacattg accctgaatc tgacccctat gtcaccccag gaagtgtgct
2341 ggggggtaca gccacatctc ccattgtaga tactgaccac caactgctgc gggataacac
2401 cacagggtct aattcttccc tcaacacctc gctgccttca cctggtgcct ggccctacag
2461 tgcctctgac aactccttta ccaacgttca tagcacttca gcaaagttcc ctgattacaa
2521 atcaacatgg tccccagatc ccataggaca caaccccact catctctcca acaagatgtg
2581 gaaaaaccat atttcctcca ggaacactac accgctgccc cgcccacctc ctggtctgac
2641 caaccccaaa ccatcatctc cctggagcag cacagcaccc cgatcagtca gggggtgggg
2701 gacacaggac tcacggctcg cctcggcctc tacctggagt gatggtggct cagttcgtcc
2761 tagttactgg ctggttcttc acaatctcac cccacagatt gatgggtcaa ccttgagaac
2821 gatctgcatg cagcatggcc cactgctgac attccatctg aatctaaccc agggcactgc
2881 cctgatccga tacagcacca aacaggaggc ggccaaggcc caaactgcac tgcacatgtg
2941 tgtgttggga aacactacca tccttgctga gtttgccact gatgatgaag tcagccgctt
3001 tctggcacaa gctcagcccc ctacacctgc agcaacccca agtgcgccag ctgcggggtg
3061 gcagtcgctg gagaccggcc agaaccagtc agatcccgtg ggacctgctc tgaatctttt
3121 tggtgggtcc actgggctcg ggcagtggag cagcagcgct ggtggcagca gcggggccga
3181 tcttgctggc gcttcattgt gggggccccc aaactattct tctagcttat ggggagtccc
3241 aacggtggaa gatccccata ggatgggcag ccctgctcct ttactacctg gtgaccttct
3301 gggaggaggg tcggattcaa tctgaactta gaactttcaa ctctgacctc gtgacctttt
3361 tttggaacag cagcagcact aacttgacct tttcgttttt tttttcaact tgcaataaat
3421 acatttttaa aagcaaaaaa aaaaaaaaaa
//