LOCUS BC028615 4860 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens solute carrier family 35, member F1, mRNA (cDNA clone
MGC:33512 IMAGE:4817165), complete cds.
ACCESSION BC028615
VERSION BC028615.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4860)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4860)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: f Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..4860
/db_xref="H-InvDB:HIT000091628"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33512 IMAGE:4817165"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4860
/gene="SLC35F1"
/gene_synonym="dJ230I3.1"
/db_xref="GeneID:222553"
/db_xref="HGNC:HGNC:21483"
CDS 205..1431
/gene="SLC35F1"
/gene_synonym="dJ230I3.1"
/codon_start=1
/product="solute carrier family 35, member F1"
/protein_id="AAH28615.1"
/db_xref="GeneID:222553"
/db_xref="HGNC:HGNC:21483"
/translation="MIPPEQPQQQLQPPSPAPPNHVVTTIENLPAEGSGGGGSLSASS
RAGVRQRIRKVLNREMLISVALGQVLSLLICGIGLTSKYLSEDFHANTPVFQSFLNYI
LLFLVYTTTLAVRQGEENLLAILRRRWWKYMILGLIDLEANYLVVKAYQYTNLTSIQL
LDCFVIPVVILLSWFFLLIRYKAVHFIGIVVCILGMGCMVGADVLVGRHQGAGENKLV
GDLLVLGGATLYGISNVWEEYIIRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKV
PWDWQIGLLYVGFSACMFGLYSFMQVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYK
FSGLYLLSFFTILIGLVLYSSTSTYIAQDPRVYKQFRNPSGPVVDLPTTAQVEPSVTY
TSLGQETEEEPHVRVA"
BASE COUNT 1281 a 1118 c 1023 g 1438 t
ORIGIN
1 agcgggactg gagaggagtg agtggcgggc tgggcggcgg cggccgtagc cgcgggtgcc
61 tccccgcctc accgcttcgc aggcagcacc gcctcccggg ccgcggccgc ccggccgggt
121 cctctgcgcg ttcccgggcc cggaaccggc acacgatgca cccggctgcg ttctgatcgc
181 cgccgcgcct cagcctctgc cgcgatgatc ccccctgagc agccgcagca gcagctgcag
241 ccgccgtcgc cagccccgcc gaaccatgtg gtgaccacca tcgagaacct gccggccgag
301 ggcagcggcg gcggcgggag cctgtccgcc tcctcccggg ctggcgtgcg ccagaggatc
361 cgcaaagtgc tgaacaggga gatgttaatc tctgtggccc taggccaggt gttatccctc
421 cttatttgtg gaattggctt gactagcaag tatctgtcag aagatttcca cgccaacaca
481 ccagtcttcc agagtttcct caattacatt cttctcttct tggtctatac caccacacta
541 gccgtcagac aaggagaaga aaacctcctg gcaattttac gacgaagatg gtggaagtac
601 atgattttgg gactcataga cctggaagca aattatctgg tggtcaaggc ttaccaatac
661 acaaatctga ccagtatcca gctcctggac tgttttgtga tcccagtcgt gattttgctc
721 tcctggttct tcctgctgat ccggtacaag gctgtgcatt tcatcggcat cgttgtctgc
781 atcctgggaa tgggctgcat ggtgggagca gatgtgcttg tgggaagaca tcagggagca
841 ggggaaaata agctggtagg ggaccttctg gtcttaggag gagccacact ctatggtatt
901 tctaacgtct gggaagaata catcatccga actctgagcc gagtggaatt cctgggaatg
961 attggtctct ttggagcatt tttcagtgga attcaattag ctataatgga gcataaggaa
1021 ctgttgaagg tgccctggga ctggcaaata ggactgctct acgttggctt tagtgcctgc
1081 atgtttggtc tctacagctt tatgcaagtc gtcataaaga aaaccagtgc cacttcagtc
1141 aacctctcct tgctcacagc agacttgtac agcctgttct gtggattgtt tctcttccac
1201 tacaagtttt caggacttta tctcctgtct ttcttcacca tcctcattgg gctggtgctc
1261 tactcctcca cctccaccta catagcccag gacccccgag tgtataagca gttccgcaat
1321 ccttcaggac ctgttgtgga cttaccgacc acagctcagg tggaaccctc agtcacctac
1381 accagcctgg gccaggagac cgaagaggag cctcatgttc gtgtggccta gggtgaggcc
1441 cgccctgcca actgaggcca actcattggc catgtttttg cccatcatct ctgtattgta
1501 catagagaaa ggtatttact aggtgcagtt tacacaggtg gactgcaagg tagcaaatcc
1561 tccaaaagct tgtgaaagga acaagctcaa catcactgga gacacaggct ctaatccacc
1621 tgacttggaa ggatgcctag ctaacgtgta tcctgatcac aactcccctg cattcattac
1681 tgtgaaaatt tttgaatcaa aagcaagtat tattgttatt atgatttgta ttattattat
1741 tgctgttact gttattacac caactttcag gaggatgttt tgtactcctg atggaaacta
1801 ttgccagacc cacatgtagt caacataaac cccacttttc tatggcaatt cactttttaa
1861 gagtcatact ttattttttt gcacagacta tatgagtgat gcatgccaca ggagctccac
1921 ccctgagaag tttccttttc ctagggacct ggtggttaat ggtttcctct gttacctgtt
1981 ggattgcctg ctcaataagt attttgtgct gtgacctttg tggggagggg caactgacca
2041 tatacttctc tattctagga atagatataa aagaaacatt ttagcctttt tatatttcga
2101 tctctgatta ctccaggcca ttgcctttct gttgtgccac gtgattctgc taatcaagtc
2161 cctgtaataa caggataagg actgttccat tactgtggct tttgggagcc cccagaaata
2221 atatcatttg tgtttaggac aatatataat tataaaatct ttctgctcct ccctgtagcc
2281 tctcttcaaa aactatcttt tatttttttt tccagatttc cttagtgata atatggaaat
2341 taatcaaggc actggaaaaa gccatggtac tctgcccttt taattctgtg acaccttttt
2401 aaaaatacac cagcatggaa attaccttta ttgtggaaaa tcattggttg tgccacctcc
2461 taacaaagtc aaggtgctga tgtggagcag tctttgaaaa tggcttaatt gatttggcca
2521 ctttgcagtg gtaacaatgt catcattgaa aaagtctggc attttggtca tatttggcat
2581 ccattcaata acagatatat tgacacgaca ttcttttttt tttttttttt ttttttgaga
2641 cggagtctca ctctgtcgcc caggctggag tgcggtggca cgatctcagc tcactgcaac
2701 ctccgcctcc gggattcaca ccattctcct gcctcagcct cccgagtagc tgggactaca
2761 ggcacctgcc acgacgccca gctaattttt tgtattttta gtagagacag ggtttcaccg
2821 tgttagccag gatggtctcg atctcctgac ctcgtgatcc gcccaccttg gcctcccgaa
2881 gtgctgggat tacaggcgtg agccactgcg cccggccaac acgacattct tatggaccca
2941 gagaatactg caggatcctg ataagacctt gagtgatatg tcactagtct aatctgttgc
3001 ccttaaaata gccctttttt caaacacagg aaattaagaa acaccacaga cctctattat
3061 ttagaataga ttctatgtgt cagtatgtga tgtactcttt tagtttgact gacttcaata
3121 ccattcaaaa agatcctcaa tggagttaca gggtttatag gggaaaaata catgtttatg
3181 agacattggg caattcaaat caacatgtgt tacataagca agcaaagcaa aacaccagtg
3241 gggtctctgg aaagtaaaag gacagactac agtagaagga ctgatcccag agtgcctgta
3301 caaggcctaa atctggcagg caaaagcatc ccacactgtc tgtcagcacc cacatggcct
3361 ttttgcctgc cttctataac gggtaagtgg acctaccctt ggagatagag aagaaaaatt
3421 atcttctctg atattcggat gtaatggtca tctcagttca gccccctagg aaacatgttt
3481 tattttccat ggggaaaata tcagcgttaa agctctatca aatcaaaaca actttgccaa
3541 catcttctct ctgctacctt ttaaaccaat taaatacctt tctctgaata ttttgtccat
3601 tcagatccga agacctttaa agactgtggt tttatttttg tgtttacatt cctttggttt
3661 gaataatttg cttgatttat tgcattttta gtatttattt taagccagat gttttcatct
3721 ttgattcatt tttatgacat taatttgtag acacttagta aagtcttatg agaagcaagt
3781 ggatgaaatt atctccaagt ccactcagta gactggagtt ttttaaaaat ataaatttcc
3841 aaaaagtttg caatcaacag atggctaaag gttgccatct gaattatttt ataggatatt
3901 ttaattgact ccattgtatg gaaaccaagt gtgaatgtta agatgaattt gccgtatacc
3961 ctttatcatt cggtgtcctt gtactcagac tttcatgtcc ctgggtgacc tcaatgtgtt
4021 ggtttgtctc catttagaaa ggttgataat atattgaatt gttcaagatc aggagttcca
4081 gactgaccct ccaggaaaaa aaaaatcgca aagaacaaat tctttttctg tgtaaaaaac
4141 actgatcctt tgggaatggg gcgggaaatg ggagtaggac aacattaact ttagctgttt
4201 tagtttctga gatttcataa cctcagtaga caccagcaaa attttcagtt tctaactcca
4261 ccaccaatct ctcctcaatg aataagactt tagcaattta tatagaattt gatcaggtaa
4321 gagcgaacca caattctcct gaaccctgct agagattaag tggtggttct cacttcatca
4381 atgaaaactt gcactgggga cagcgcttgc cttggtcaga ccttcccaca tctacatact
4441 ctcaaataca tgaccaggtg atcaagcaat ggaaaaattt gcaccaccgt gtcccatgaa
4501 attgtttcaa tgtttagttt agatattgct aacttgtgct attaaccttt tgacaagcgt
4561 gtagtattgt ttgttttggg tttctttttg atttataact atttagtagt ccccagctag
4621 ctaccagtac agattttacc ccatgggtag gattctattg ttaagccaca taacaaagca
4681 cactaattct gacaacactg caaatggaaa atacgaacca aaaaaaagtt acaccgataa
4741 gttcaacaaa ctgtccattt ttgatatttg catgctcccc tatggactgg ctgtggcaat
4801 gtaatgcctg tataatgttt tcaaataaaa ataaatgctt tatgaaaaaa aaaaaaaaaa
//