LOCUS BC028242 3546 bp mRNA linear HTC 18-JAN-2005
DEFINITION Homo sapiens programmed cell death 6, mRNA (cDNA clone
IMAGE:5243036), with apparent retained intron.
ACCESSION BC028242
VERSION BC028242.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3546)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3546)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: n Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..3546
/db_xref="H-InvDB:HIT000040509"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5243036"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 808 a 841 c 912 g 985 t
ORIGIN
1 cccggcagag gcggaagcgg agtcggcctg agaggtctct cgtcgctgca ggcgcctcag
61 cccagccgcg tgccttggcc catggccgcc tactcttacc gccccggccc tgggcctgct
121 gcaggcgcgg cgctgccgga ccagagcttc ctgtggaacg ttttccagag ggtcgataaa
181 gacaggagtg gagtgatatc agacaccgag cttcagcaag ctctctccaa cggcacgtgg
241 actcccttta atccagtgac tgtcaggtcg atcatatgta agtatcggca gacggaccaa
301 cctgggctgc tttgtatccg acccgcttgg gtacccgctt gtgtttcctt tgtctgtggg
361 tccgtatcac tttgctccct tctggaattc cacttagatg agcgtcggcc ctttcatccc
421 tctccctccg tctctgtacc ttttcacatc tctccgtgta tgtttgctct attcttgatt
481 ctgtttattt ttaatgtacg gtgtaacctg tcctttcagt ttctaattct aaagatgaca
541 tatatttaaa atttctaaat tattagttac tttcacatct tatctgggtg tttttgatag
601 acattgctta tttatttttg tgattccatt ctttattcaa atatttcata tgatagtctt
661 cagttttaag aacatgcttt tttgaaaagc gctagatatt tgtgacatgg agctccttga
721 ctgtgtttga agtccttggg agggtggtct acagccagat atttttcctg ctcaagccca
781 cacagagtga ccaacttcct tgatgcttct gtaatttttg tttgttttgt gggttcatgt
841 gtagccttaa tgtgagggtc tgcatcattt ctttgggtcc agggtctccc cagctgtata
901 ggcagctggg tttttgtttg tttcttttaa gagacagggt gtccctgtgc tgcccaggcc
961 tggtctggaa ttcctgggct cacgcaatcc tcctgcctca gcctcccaaa aagtggggat
1021 tacaggtgtg cacccccatg cccagacggt agccggggtg tgagctgagg ctccaggcgc
1081 aggcaggtgt tcaggagagt cgtgctgtgt ctccatcccc cgtagccagg tgggagctgc
1141 agctccaggg gcaggcaggc ctgggaggca ggtgttcagg agagtcatgt ttccatccct
1201 acccgacttg atttctggaa ggttcccttt gctgggaggt gcagccccct tcagacctct
1261 ttaatatgga atcccaggtt cagttctgcc tcacagggac catggcattg tgtctcgagg
1321 tttcccagag cggcctgggg ctcattccct cgcctcccat ccatgcacgt gttttagtct
1381 tgtgaggatt ccctgagttc cttgcggagc ctgtgtgtgg tgaggtgtct gagtcctagt
1441 gtgggtgtag ctgggggctt ttccagatga ctgtgccctg ctggtcgtgc atatgttgct
1501 acgtcacact gatggaggga gagaaaactt ggaagtgtag tagtggcagg gctcagcctt
1561 tagtgctaga aaaggtgttg atacatgggg agctacctcc ccaccggaga ggaatggcct
1621 gggagccact cctctgcgga gcccttaccc tggggtgcag ctcacccagc atccttccct
1681 gctggtgtgt ggtgcgcagt gggtcctgca cgcaacagca tcgtccacac acactgcaca
1741 catcgtggaa tggtcgtatg aaaaacagcc cctggtccac acaccacaca cgtcgtggaa
1801 cggtgcacgt cgtggaacgg ttgtgtgaaa aacagccact ggttgcacac agggttgtgg
1861 actgttggga agaaacatcg atgctgtttc tcacatgatt tttcatcctg tggattttca
1921 tttaattgta acatatttct gatcaaacca ggagtagtct tattgcagtc ctgtattaac
1981 ctctgttctt gaaaagagac cacgtgattt atcattttct ctgcagcagt aattcacact
2041 gaatttttct atgtttttta gccatattgc aactacatat aaaggtagtt atagattctt
2101 ttgtatttgg acctggagtt agactgaaag caaataggac ataggcgagg gtctgtttct
2161 aattaaagca ggttttcctg acagggctgt tccaagactc caccagtgct gtgggccctg
2221 gagagtcaga gggtcagctc tgggaattag attcgcgttc taggccgaga cccaggagcc
2281 aggggagctg gggccactta ccttccccgt gcctcggaag ctgagtgtga agctctgctc
2341 ttctttctgt cgtggctgcg gctggatttc ctcacacatc ccattgcacg gcctgcctca
2401 cagctgcaag tgcaccttct cctgggactt agggggtcag ggctggggga caatccccca
2461 cacccccacc cagggcgaag gtgacaagac tttaagggat ttcaccccat tcacagacag
2521 gcatgcattg cccagtccct ggttagtggt cagcagtggg gccccgccag gctctgaggg
2581 ctgaggtctg gtgggaagcc tcaagtgagt ttgctgcaac tgatcttttg ctgcttgacc
2641 gttcctctct gtctcagcca tgtttgaccg tgagaacaag gccggcgtga acttcagcga
2701 gttcacgggt gtgtggaagt acatcacgga ctggcagaac gtcttccgca cgtacgaccg
2761 ggacaactcc gggatgatcg ataagaacga gctgaagcag gccctctcag gctaccggct
2821 ctctgaccag ttccacgaca tcctcattcg aaagtttgac aggcagggac gggggcagat
2881 tgccttcgac gacttcatcc agggctgcat cgtcctgcag aggttgacgg atatattcag
2941 acgttacgac acggatcagg acggctggat tcaggtgtcg tacgaacagt acctgtccat
3001 ggtcttcagt atcgtatgac cctggcctct cgtgaagagc agcacaacat ggaaagagcc
3061 aaaatgtcac agttcctatc tgtgagggaa tggagcacag gtgcagttag atgctgttct
3121 tcctttagat tttgtcacgt ggggacccag ctgtacatat gtggataagc tgattaatgg
3181 ttttgcaact gtaatagtag ctgtatcgtt ctaatgcaga cattggattt ggtgactgtc
3241 tcattgtgcc atgaggtaaa tgtaatgttt caggcattct gcttgcaaaa aaatctatca
3301 tgtgcttttc tagatgtctc tggttctata gtgcaaatgc ttttattagc caataggaat
3361 tttaaaataa catggaactt acacaaaagg cttttcatgt gccttacttt tttaaaaagg
3421 agtttattgt attcattgga atatgtgacg taagcaataa agggaatgtt agaaaaaaaa
3481 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3541 aaaaaa
//