LOCUS BC028183 4869 bp mRNA linear HUM 26-JUN-2007 DEFINITION Homo sapiens SEC16 homolog A (S. cerevisiae), mRNA (cDNA clone IMAGE:4508322), partial cds. ACCESSION BC028183 VERSION BC028183.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4869) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4869) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 62 Row: b Column: 4 This clone was selected for full length sequencing because it passed the following selection criteria: Similarity but not identity to protein. FEATURES Location/Qualifiers source 1..4869 /db_xref="H-InvDB:HIT000091526" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4508322" /tissue_type="Testis, embryonal carcinoma" /clone_lib="NIH_MGC_92" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..4869 /gene="SEC16A" /gene_synonym="p250" /gene_synonym="RP11-413M3.10" /gene_synonym="SEC16L" /db_xref="GeneID:9919" /db_xref="HGNC:HGNC:29006" CDS <1..3190 /gene="SEC16A" /gene_synonym="p250" /gene_synonym="RP11-413M3.10" /gene_synonym="SEC16L" /codon_start=2 /product="SEC16A protein" /protein_id="AAH28183.1" /db_xref="GeneID:9919" /db_xref="HGNC:HGNC:29006" /translation="HASARVRDPRTYDRRYWCDAEYDAYRREHSAFGDRPEKRDNNWR YDPRFTGSFDDDPDPHRDPYGEEVDRRSVHSEHSARSLHSAHSLASRRSSLSSHSHQS QIYRSHNVAAGSYEAPLPPGSFHGDFAYGTYRSNFSSGPGFPEYGYPADTVWPAMEQV SSRPTSPEKFSVPHVCARFGPGGQLIKVIPNLPSEGQPALVEVHSMEALLQHTSEQEE MRAFPGPLAKDDTHKVDVINFAQNKAMKCLQNENLIDKESASLLWNFIVLLCRQNGTV VGTDIAELLLRDHRTVWLPGKSPNEANLIDFTNEAVEQVEEEESGEAQLSFLTGGPAA AASSLERETERFRELLLYGRKKDALESAMKNGLWGHALLLASKMDSRTHARVMTRFAN SLPINDPLQTVYQLMSGRMPAASTCCGDEKWGDWRPHLAMVLSNLNNNMDVESRTMAT MGDTLASRGLLDAAHFCYLMAQAGFGVYTKKTTKLVLIGSNHSLPFLKFATNEAIQRT EAYEYAQSLGAETCPLPSFQVFKFIYSCRLAEMGLATQAFHYCEAIAKSILTQPHLYS PVLISQLVQMASQLRLFDPQLKEKPEEESLAAPTWLVHLQQVERQIKEGAGVWHQDGA LPQQCPGTPSSEMEQLDRPGLSQPGALGIANPLLAVPAPSPEHSSPSVRLLPSAPQTL PDGPLASPARVPMFPVPLPPGPLEPGPGCVTPGPALGFLEPSGPGLPPGVPPLQERRH LLQEARSPDPGIVPQEAPVGNSLSELSEENFDGKFANLTPSRTVPDSEAPPGWDRADS GPTQPPLSLSPAPETKRPGQAAKKETKEPKKGESWFFRWLPGKKKTEAYLPDDKNKSI VWDEKKNQWVNLNEPEEEKKAPPPPPTSMPKTVQAAPPALPGPPGAPVNMYSRRAAGT RARYVDVLNPSGTQRSEPALAPADFVAPLAPLPIPSNLFVPTPDAEEPQLPDGTGREG PAAARGLANPEPAPEPKVLSSAASLPGSELPPSRPEGSQGGEAPGDLPAAGGPPSGAM PFYNPAQLAQACATSGSSRLGRIGQRKHLVLN" BASE COUNT 1106 a 1374 c 1321 g 1068 t ORIGIN 1 ccacgcgtcc gctagagtca gggacccccg cacctatgac cggaggtatt ggtgtgatgc 61 agagtatgac gcatacagga gagagcactc tgccttcggg gacaggcccg agaaacgtga 121 caacaactgg aggtacgatc ctcgcttcac ggggagtttt gacgatgacc ccgatccgca 181 cagagaccct tatggggaag aggtggaccg gcgcagcgtc cacagcgagc actcggcacg 241 gagcctgcac agcgcacaca gcctggccag ccgccgcagc agcctcagct cccactcgca 301 ccagagtcag atttacagaa gccacaatgt ggctgccggt tcctacgagg ccccgcttcc 361 tccaggctcc tttcacggcg attttgccta cggcacctac cgcagcaatt tcagcagtgg 421 ccccggcttc ccagagtatg gctaccctgc cgacaccgtc tggcctgcca tggagcaagt 481 ttcatcaaga ccaacttctc ctgaaaaatt ttcagtgcct catgtctgtg ccaggtttgg 541 ccctggcggt cagcttatca aagtgattcc caatctgcct tcagaaggac agccggcctt 601 ggtggaggtc cacagcatgg aggccttgct gcagcacacg tctgagcagg aggagatgcg 661 ggcgttcccg ggacccctgg ccaaagacga cacccataag gtggatgtca ttaattttgc 721 acagaacaaa gctatgaaat gtttgcagaa tgaaaactta attgacaaag agtctgcaag 781 tcttctttgg aattttattg ttctcttatg cagacaaaat gggaccgtgg tagggaccga 841 cattgcggag cttctgttac gagaccacag aacagtgtgg cttcctggga agtcgcccaa 901 tgaagcaaac ctgattgatt tcacgaatga ggcagtggag caggtggaag aggaggagtc 961 tggtgaggcc cagctctctt tcctcactgg tggtccggcg gctgccgcca gctcgctcga 1021 gagagagacc gagaggttca gggagctgtt gctgtatggc cgtaagaagg atgctttgga 1081 gtctgcaatg aagaatggcc tgtggggtca cgctctgcta cttgcaagta agatggacag 1141 ccggacacac gcccgagtca tgaccaggtt tgctaacagc ctcccaatca acgaccctct 1201 gcagacagtc taccagctca tgtccggacg gatgcctgcc gcgtccacgt gctgtggaga 1261 cgagaaatgg ggagattgga ggccgcacct cgccatggtc ttgtccaact tgaacaacaa 1321 catggacgtc gagtccagga cgatggctac catgggcgac actctggctt caaggggcct 1381 cttggatgcg gcccacttct gctacctcat ggcccaggcg ggatttggtg tttacacgaa 1441 gaaaactaca aagcttgtct taatcggatc caatcacagt ttgccattct taaagttcgc 1501 aaccaacgaa gcaatccaga ggacggaagc ctatgagtac gcccagtccc tgggtgccga 1561 gacctgcccc ctgcctagtt tccaggtgtt taagttcatc tactcctgcc gcctggcgga 1621 aatggggctg gccacgcaag ccttccacta ctgtgaggcc atcgcgaaga gcatcctgac 1681 gcagccgcac ctgtattccc cggtgttgat cagccagctt gtgcagatgg cttcccagtt 1741 acgactcttc gatccccagc tgaaagagaa gccagaagag gagtccttgg ccgcacccac 1801 gtggctggtt cacctgcagc aggtggagcg gcagattaag gagggggctg gagtatggca 1861 tcaggatgga gccctcccgc agcagtgtcc tggcactccg agttccgaga tggagcagtt 1921 ggacaggcca ggactcagtc agccaggagc cctggggatc gccaaccctc tgctggcggt 1981 gcctgcaccg agccctgagc actcgagccc gagcgtgcgg ctgctgccct cagctccgca 2041 gacgctccct gacggcccat tggccagtcc tgccagagtg ccgatgttcc cagtgccact 2101 gcccccgggg cccctggagc cgggtcctgg ctgtgtgacc ccagggcctg cacttggctt 2161 cctggagccc tccgggcctg gcctcccacc tggtgtgcca cctctgcagg aaaggagaca 2221 cttgctccag gaagccagga gcccagaccc agggatagtg ccgcaggagg cgcctgttgg 2281 aaactcactt tccgagctaa gcgaagaaaa ttttgatgga aaatttgcta atctgacccc 2341 ctcgaggacg gtgccagact cggaggcccc cccagggtgg gatcgtgccg actcgggtcc 2401 cacgcagcca cctctgtctc tctcacccgc tcccgaaaca aagagacccg gacaggcagc 2461 caagaaagaa acgaaggaac ctaagaaggg tgaatcctgg ttctttcgtt ggctacctgg 2521 aaagaaaaag acagaagctt atttgccaga tgacaagaac aaatcgattg tttgggatga 2581 aaagaaaaac cagtgggtga atttaaatga gccagaagag gagaagaaag ccccgccccc 2641 acctccaacc tcgatgccca agactgtgca agctgccccg cctgccctcc cagggcctcc 2701 tggagccccc gtgaacatgt actctagaag agcagcagga accagagctc gctacgttga 2761 cgtcctgaac ccaagcggga cccagcggag cgagccggct ctcgctcctg cggactttgt 2821 cgctccactc gcgccactcc caattccttc taacttgttc gtgccaaccc cagatgcaga 2881 agaaccacag cttccagacg ggactggcag ggaagggcct gcagcagcta ggggcctggc 2941 caatccagag cctgccccag agcccaaggt tttaagctct gcagcgtcac tccctggctc 3001 tgaactcccc ccctccaggc ctgagggttc ccagggagga gaggctcctg gcgacctccc 3061 tgctgcaggg ggccctccca gcggggccat gcccttctac aaccctgctc agctggcaca 3121 ggcctgcgcc acctccggga gctcaaggct agggaggatt ggccagagga agcacctggt 3181 gctgaactag gcttgccctg ctgtgaactt gcacttggag ccctgacgct gctgttctcc 3241 ccgaagaacc cgaccgacct ccgcgatctc cgtcccgccc ccagggagac acagcagtga 3301 ctcagagctg gtcgcacact gtgcctccct cctcaccgcc catcgtaatg aattattttg 3361 aaaattaatt ccaccatcct ttcagattct ggatggaaag actgaatctt tgactcagaa 3421 ttgtttgccg aaaagaatga tgtgactttc ttagtcattt aggatgattt aaggatatag 3481 tattcctggt catttaagaa tgttcattca ttgaagccgg agctgtctct gccacaggag 3541 agccacatgg tcggtagtaa ccagggcctc tccaagccca gctgtgagtc actgcccagt 3601 gagtcccgcg cttcctttaa ggtgctggga gcaaagagag ggtgactgag gcagacccca 3661 acccctgctc tgcaccatct gggccctcgc cgtgtttgaa cctggctgaa tgagtggagg 3721 gcgctgtgtt ctcaatcagc gcctccgagg agccgtgggg ttccttcggc attagttcac 3781 ggtttttgag agaggcctta gttactgcag tgaatttctt tcctgttgca aagacgcttc 3841 cagcctcact ttactttctg tggcctgatg aggaccatgg gtgattttgt gtacccaaag 3901 cgctggggac tgcccaccgt gtggcccagt cactgggaag gagccccaga gagccggctg 3961 tctgacatga tggctcaggg tggtcatcca ggttgaaaac tgaccgtgtg atgtttgatt 4021 tgggcttcat ttcgtgtgta ggagcacggt tagactcact gttaaggaag ctggatgcac 4081 ttctctaaaa ggctgcactt tccgtgagca cttttcgtgg tacaatccac atgacccact 4141 ttctcccctg ggggacgttg gttcagaggt tggtagcact tggggagagt atcttaacac 4201 agtttcttga cagcagctct ggaacttagt atttctgccc cgagttttgc cacactgaga 4261 ctttgagtag ctcctggtgg actcaaccct gttcaactca gagacgggcc tcctctcact 4321 gatgcaaagc tttaaggctt ctctgactgt tctgaaactc ttcgtattct tgtcaagtct 4381 aaagagactg aagaaaagat ttaaatacta ataaaaatca gtagataatt tctgtaggtt 4441 ctgctggagg aatacaaact gtttggtgtt ttaaatttaa gtgtagaaat tgtagaatgt 4501 ggaattagca cagatccttc ctggctttct gtttcacttg atcatttagc ccagaccacc 4561 caggatgttt tccaaaatgt tccacaggcg tgtcccgctg gatccatttg tccttgtcac 4621 ttggagaaag gccagtccct gtgacggggc agccctctct gtccctcggt cagctcgtgt 4681 gaatcctggg acctcttccg gtcggctctg cccgctgttc tggggtcgac tgccacgact 4741 tttgattcaa gaagcttcct ccaggcggga gcggctattt ttcctaaatg agaattgtta 4801 cattgcaaat tgttgaataa aatattttgc gctccttcaa aaaaaaaaaa aaaaaaaaaa 4861 aaaaaaaaa //