LOCUS BC028166 1438 bp mRNA linear HUM 16-FEB-2007
DEFINITION Homo sapiens chromosome 8 open reading frame 38, mRNA (cDNA clone
IMAGE:5245422), complete cds.
ACCESSION BC028166
VERSION BC028166.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1438)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1438)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: n Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22748880
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1438
/db_xref="H-InvDB:HIT000040472"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5245422"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1438
/gene="C8orf38"
/db_xref="GeneID:137682"
/db_xref="HGNC:HGNC:28625"
CDS 16..381
/gene="C8orf38"
/codon_start=1
/product="C8orf38 protein"
/protein_id="AAH28166.1"
/db_xref="GeneID:137682"
/db_xref="HGNC:HGNC:28625"
/translation="MAASAHGSVWGPLRLGIPGLCCRRPPLGLYARMRRLPGPEVSGR
SVAAASGPGAWGTDHYCLELLRKRDYEGYLCSLLLPAESRSSVFALRAFNVELAQAGL
LLLLSCCTVCHWDLNTKHC"
BASE COUNT 434 a 312 c 325 g 367 t
ORIGIN
1 cgcagtgccg gcgtcatggc ggcctccgcg cacggctctg tctgggggcc gttgcggctt
61 ggcatccccg gcctgtgctg ccgccggccg cctctgggtc tgtacgcgcg catgcggcgg
121 ctgcccgggc cggaggtgtc tgggcggagc gtggctgcgg ccagcggacc gggcgcctgg
181 ggcactgacc actactgcct ggagctgctg cggaaacggg attatgaagg ttatttatgc
241 tccctgctgc tccctgcaga atcccgaagc tctgtttttg cactgagggc ctttaatgtg
301 gaactggctc aggctggatt actcttgctg ctgtcttgct gtactgtatg ccactgggat
361 ctgaacacta aacattgcta agaaacccac ccaccaccag gatatttgga agtaacttca
421 catatggaaa agttaaagac tcagtctctg agaaaacaat tggactgatg cgaatgcagt
481 tttggaaaaa aactgtggaa gatatatact gtgacaatcc accacatcag cctgtggcca
541 ttgaactatg gaaggttgtc ccagctttgg acagcggaaa ctccttcaca gcggctgcta
601 tgtccttgtg acacgcttcc gtcatttttt ggagcacttt cttattttct gacacaataa
661 gatattctag gatccttttg aatctctccc ctgcctcacc tttggaatcg cccatttctc
721 gagagccctg attcctttaa ggagaatggt agtagagaca agtgtctggg cactaggctg
781 ttaaaagaca taatctgact aaaagatggc ttatgaaaat cgtcgatgaa agagaaaaaa
841 atctggatga caaagcatat cgtaatatca aggaactgga aaattatgct gaaaacacac
901 agagctctct tctttactta acactagaaa tattgggtat aaaggatctt catgcagatc
961 atgctgcaag tcatattgga aaagcacaag gcattgtcac ttgcttgaga gcaacaccat
1021 atcatgggag cagaagaaag gtgttccttc ccatggatat ttgtatgctg catggtgttt
1081 cacaagagga ctttctacgg aggaaccaag ataaaaatgt gagagatgta atatatgaca
1141 ttgccagtca agcacacttg cacctaaagc atgctaggtc ctttcacaaa actgttcctg
1201 tgaaagcatt tcctgctttt cttcagacgg tttctctaga ggactttcta aagaaaattc
1261 agcgagtgga ttttgatata ttccacccat ctttacagca gaagaataca ttacttccat
1321 tatatttgta tattcagtca tggagaaaaa catattaaaa taatttcatg gcaaaaaaaa
1381 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//