LOCUS BC028165 3775 bp mRNA linear HUM 21-SEP-2006
DEFINITION Homo sapiens protocadherin 17, mRNA (cDNA clone MGC:39854
IMAGE:5245587), complete cds.
ACCESSION BC028165
VERSION BC028165.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3775)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3775)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: n Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14589926.
FEATURES Location/Qualifiers
source 1..3775
/db_xref="H-InvDB:HIT000091518"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39854 IMAGE:5245587"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3775
/gene="PCDH17"
/gene_synonym="PCDH68"
/gene_synonym="PCH68"
/db_xref="GeneID:27253"
/db_xref="HGNC:HGNC:14267"
CDS 27..3506
/gene="PCDH17"
/gene_synonym="PCDH68"
/gene_synonym="PCH68"
/codon_start=1
/product="protocadherin 17"
/protein_id="AAH28165.1"
/db_xref="GeneID:27253"
/db_xref="HGNC:HGNC:14267"
/translation="MYLSICCCFLLWAPALTLKNLNYSVPEEQGAGTVIGNIGRDARL
QPGLPPAERGGGGRSKSGSYRVLENSAPHLLDVDADSGLLYTKQRIDRESLCRHNAKC
QLSLEVFANDKEICMIKVEIQDINDNAPSFSSDQIEMDISENAAPGTRFPLTSAHDPD
AGENGLRTYLLTRDDHGLFGLDVKSRGDGTKFPELVIQKALDREQQNHHTLVLTALDG
GEPPRSATVQINVKVIDSNDNSPVFEAPSYLVELPENAPLGTVVIDLNATDADEGPNG
EVLYSFSSYVPDRVRELFSIDPKTGLIRVKGNLDYEENGMLEIDVQARDLGPNPIPAH
CKVTVKLIDRNDNAPSIGFVSVRQGALSEAAPPGTVIALVRVTDRDSGKNGQLQCRVL
GGGGTGGGGGLGGPGGSVPFKLEENYDNFYTVVTDRPLDRETQDEYNVTIVARDGGSP
PLNSTKSFAIKILDENDNPPRFTKGLYVLQVHENNIPGEYLGSVLAQDPDLGQNGTVS
YSILPSHIGDVSIYTYVSVNPTNGAIYALRSFNFEQTKAFEFKVLAKDSGAPAHLESN
ATVRVTVLDVNDNAPVIVLPTLQNDTAELQVPRNAGLGYLVSTVRALDSDFGESGRLT
YEIVDGNDDHLFEIDPSSGEIRTLHPFWEDVTPVVELVVKVTDHGKPTLSAVAKLIIR
SVSGSLPEGVPRVNGEQHHWDMSLPLIVTLSTISIILLAAMITIAVKCKRENKEIRTY
NCRIAEYSHPQLGGGKGKKKKINKNDIMLVQSEVEERNAMNVMNVVSSPSLATSPMYF
DYQTRLPLSSPRSEVMYLKPASNNLTVPQGHAGCHTSFTGQGTNASETPATRMSIIQT
DNFPAEPNYMGSRQQFVQSSSTFKDPERASLRDSGHGDSDQADSDQDTNKGSCCDMSV
REALKMKTTSTKSQPLEQEPEECVNCTDECRVLGHSDRCWMPQFPAANQAENADYRTN
LFVPTVEANVETETYETVNPTGKKTFCTFGKDKREHTILIANVKPYLKAKRALSPLLQ
EVPSASSSPTKACIEPCTSTKGSLDGCEAKPGALAEASSQYLPTDSQYLSPSKQPRDP
PFMASDQMARVFADVHSRASRDSSEMGAVLEQLDHPNRDLGRESVDAEEVVREIDKLL
QDCRGNDPVAVRK"
BASE COUNT 916 a 1117 c 1031 g 711 t
ORIGIN
1 tcctgccccc accttacagg tctgggatgt acctttccat ctgttgctgc tttcttctat
61 gggcccctgc cctcactctc aagaacctca actactccgt gccggaggag caaggggccg
121 gcacggtgat cgggaacatc ggcagggatg ctcgactgca gcctgggctt ccgcctgcag
181 agcgcggcgg cggagggcgc agcaagtcgg gtagctaccg ggtgctggag aactccgcac
241 cgcacctgct ggacgtggac gcagacagcg ggctcctcta caccaagcag cgcatcgacc
301 gcgagtccct gtgccgccac aatgccaagt gccagctgtc cctcgaggtg ttcgccaacg
361 acaaggagat ctgcatgatc aaggtagaga tccaggacat caacgacaac gcgccctcct
421 tctcctcgga ccagatcgaa atggacatct cggagaacgc tgctccgggc acccgcttcc
481 ccctcaccag cgcacatgac cccgacgccg gcgagaatgg gctccgcacc tacctgctca
541 cgcgcgacga tcacggcctc tttggactgg acgttaagtc ccgcggcgac ggcaccaagt
601 tcccagaact ggtcatccag aaggctctgg accgcgagca acagaatcac catacgctcg
661 tgctgactgc cctggacggt ggcgagcctc cacgttccgc caccgtacag atcaacgtga
721 aggtgattga ctccaacgac aacagcccgg tcttcgaggc gccatcctac ttggtggaac
781 tgcccgagaa cgctccgctg ggtacagtgg tcatcgatct gaacgccacc gacgccgatg
841 aaggtcccaa tggtgaagtg ctctactctt tcagcagcta cgtgcctgac cgcgtgcggg
901 agctcttctc catcgacccc aagaccggcc taatccgtgt gaagggcaat ctggactatg
961 aggaaaacgg gatgctggag attgacgtgc aggcccgaga cctggggcct aaccctatcc
1021 cagcccactg caaagtcacg gtcaagctca tcgaccgcaa cgacaatgcg ccgtccatcg
1081 gtttcgtctc cgtgcgccag ggggcgctga gcgaggccgc ccctcccggc accgtcatcg
1141 ccctggtgcg ggtcactgac cgggactctg gcaagaacgg acagctgcag tgtcgggtcc
1201 taggcggagg agggacgggc ggcggcgggg gcctgggcgg gcccgggggt tccgtcccct
1261 tcaagcttga ggagaactac gacaacttct acacggtggt gactgaccgc ccgctggacc
1321 gcgagacaca agacgagtac aacgtgacca tcgtggcgcg ggacgggggc tctcctcccc
1381 tcaactccac caagtcgttc gcgatcaaga ttctagacga gaacgacaac ccgcctcggt
1441 tcaccaaagg gctctacgtg cttcaggtgc acgagaacaa catcccggga gagtacctgg
1501 gctctgtgct cgcccaggat cccgacctgg gccagaacgg caccgtatcc tactctatcc
1561 tgccctcgca catcggcgac gtgtctatct acacctatgt gtctgtgaat cccacgaacg
1621 gggccatcta cgccctgcgc tcctttaact tcgagcagac caaggctttt gagttcaagg
1681 tgcttgctaa ggactcgggg gcgcccgcgc acttggagag caacgccacg gtgagggtga
1741 cagtgctaga cgtgaatgac aacgcgccag tgatcgtgct ccccacgctg cagaacgaca
1801 ccgcggagct gcaggtgccg cgcaacgctg gcctgggcta tctggtgagc actgtgcgcg
1861 ccctagacag cgacttcggc gagagcgggc gtctcaccta cgagatcgtg gacggcaacg
1921 acgaccacct gtttgagatc gacccgtcca gcggcgagat ccgcacgctg caccctttct
1981 gggaggacgt gacgcccgtg gtggagctgg tggtgaaggt gaccgaccac ggcaagccta
2041 ccctgtccgc agtggccaag ctcatcatcc gctcggtgag cggatccctt cccgaggggg
2101 taccacgggt gaatggcgag cagcaccact gggacatgtc gctgccgctc atcgtgactc
2161 tgagcactat ctccatcatc ctcctagcgg ccatgatcac catcgccgtc aagtgcaagc
2221 gcgagaacaa ggagatccgc acttacaact gccgcatcgc cgagtacagc cacccgcagc
2281 tgggtggggg caagggcaag aagaagaaga tcaacaaaaa tgatatcatg ctggtgcaga
2341 gcgaagtgga ggagaggaac gccatgaacg tcatgaacgt ggtgagcagc ccctccctgg
2401 ccacctcccc catgtacttc gactaccaga cccgcctgcc cctcagctcg ccccggtcgg
2461 aggtgatgta tctcaaaccg gcctccaaca acctgactgt ccctcagggg cacgcgggct
2521 gccacaccag cttcaccgga caagggacta atgcaagcga gacccctgcc actcggatgt
2581 ccataattca gacagacaat tttcccgcag agcccaatta catgggcagc aggcagcagt
2641 ttgttcaaag tagctccacg tttaaggacc cagaaagagc cagcctgaga gacagtgggc
2701 acggggacag tgatcaggct gacagtgacc aagacactaa caaaggctcc tgctgtgaca
2761 tgtctgttag ggaggcactc aagatgaaaa ctacttcaac taaaagccaa ccacttgaac
2821 aagaaccaga agagtgtgtt aattgcacag atgaatgccg agtgcttggt cattctgaca
2881 ggtgctggat gccacagttc cctgcagcca atcaggctga aaatgcagat taccgcacaa
2941 atctctttgt acctacagtt gaagctaatg ttgagactga gacttacgaa actgtgaatc
3001 ccactgggaa aaagactttt tgtacatttg gaaaagacaa gcgagagcac actattctca
3061 ttgccaacgt taaaccttat ttaaaagcca aacgtgccct gagccctctc ctccaagagg
3121 tcccctcagc atcaagcagc ccaaccaagg cgtgcatcga gccttgcacc tcaacaaaag
3181 gctccctgga tggctgtgaa gcaaaaccag gagccctggc tgaagcaagc agtcagtact
3241 tgcccactga cagtcaatat ctgtcaccta gtaagcaacc aagagaccct cccttcatgg
3301 cttccgatca gatggcaagg gtctttgcag atgtgcattc cagagccagc cgggattcca
3361 gtgagatggg tgctgttctt gagcagcttg accaccccaa cagggatctg ggcagagagt
3421 ctgtggatgc agaggaagtt gtgagagaaa ttgataagct tttgcaagac tgccggggaa
3481 acgaccctgt ggctgtgaga aagtgaaaaa agaaaaaaaa aaaaggcatt ggcattttct
3541 tgtctcttct gttgatttaa aaatgatccc tcctggtgat aacccatttt acagggatga
3601 agaaagacca atgctgcttt aaggctttta gtgaacatct gaagtgccca caagtatgtt
3661 ctttccactg ctgatttctt tttcagagat aacaatggtt tcgttttgac caaacttgta
3721 ttaggacaga attaatgatg cttaaagaga aaaaaaaaaa aaaaaaaaaa aaaaa
//