LOCUS BC028148 1676 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens tumor necrosis factor (TNF superfamily, member 2), mRNA (cDNA clone MGC:39905 IMAGE:5217636), complete cds. ACCESSION BC028148 VERSION BC028148.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1676) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1676) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 62 Row: j Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 25952110. FEATURES Location/Qualifiers source 1..1676 /db_xref="H-InvDB:HIT000040462_10" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:39905 IMAGE:5217636" /tissue_type="Blood, adult leukocytes" /clone_lib="NIH_MGC_118" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1676 /gene="TNF" /gene_synonym="DIF" /gene_synonym="TNF-alpha" /gene_synonym="TNFSF2" /db_xref="GeneID:7124" /db_xref="HGNC:HGNC:11892" /db_xref="MIM:191160" CDS 158..859 /gene="TNF" /gene_synonym="DIF" /gene_synonym="TNF-alpha" /gene_synonym="TNFSF2" /codon_start=1 /product="tumor necrosis factor (TNF superfamily, member 2)" /protein_id="AAH28148.1" /db_xref="GeneID:7124" /db_xref="HGNC:HGNC:11892" /db_xref="MIM:191160" /translation="MSTESMIRDVELAEEALPKKTGGPQGSRRCLFLSLFSFLIVAGA TTLFCLLHFGVIGPQREEFPRDLSLISPLAQAVRSSSRTPSDKPVAHVVANPQAEGQL QWLNRRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIA VSYQTKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYL DFAESGQVYFGIIAL" BASE COUNT 399 a 496 c 402 g 379 t ORIGIN 1 ggacagcaga ggaccagcta agagggagag aagcaactac agaccccccc tgaaaacaac 61 cctcagacgc cacatcccct gacaagctgc caggcaggtt ctcttcctct cacatactga 121 cccacggctc caccctctct cccctggaaa ggacaccatg agcactgaaa gcatgatccg 181 ggacgtggag ctggccgagg aggcgctccc caagaagaca ggggggcccc agggctccag 241 gcggtgcttg ttcctcagcc tcttctcctt cctgatcgtg gcaggcgcca ccacgctctt 301 ctgcctgctg cactttggag tgatcggccc ccagagggaa gagttcccca gggacctctc 361 tctaatcagc cctctggccc aggcagtcag atcatcttct cgaaccccga gtgacaagcc 421 tgtagcccat gttgtagcaa accctcaagc tgaggggcag ctccagtggc tgaaccgccg 481 ggccaatgcc ctcctggcca atggcgtgga gctgagagat aaccagctgg tggtgccatc 541 agagggcctg tacctcatct actcccaggt cctcttcaag ggccaaggct gcccctccac 601 ccatgtgctc ctcacccaca ccatcagccg catcgccgtc tcctaccaga ccaaggtcaa 661 cctcctctct gccatcaaga gcccctgcca gagggagacc ccagaggggg ctgaggccaa 721 gccctggtat gagcccatct atctgggagg ggtcttccag ctggagaagg gtgaccgact 781 cagcgctgag atcaatcggc ccgactatct cgactttgcc gagtctgggc aggtctactt 841 tgggatcatt gccctgtgag gaggacgaac atccaacctt cccaaacgcc tcccctgccc 901 caatcccttt attaccccct ccttcagaca ccctcaacct cttctggctc aaaaagagaa 961 ttgggggctt agggtcggaa cccaagctta gaactttaag caacaagacc accacttcga 1021 aacctgggat tcaggaatgt gtggcctgca cagtgaagtg ctggcaacca ctaagaattc 1081 aaactggggc ctccagaact cactggggcc tacagctttg atccctgaca tctggaatct 1141 ggagaccagg gagcctttgg ttctggccag aatgctgcag gacttgagaa gacctcacct 1201 agaaattgac acaagtggac cttaggcctt cctctctcca gatgtttcca gacttccttg 1261 agacacggag cccagccctc cccatggagc cagctccctc tatttatgtt tgcacttgtg 1321 attatttatt atttatttat tatttattta tttacagatg aatgtattta tttgggagac 1381 cggggtatcc tgggggaccc aatgtaggag ctgccttggc tcagacatgt tttccgtgaa 1441 aacggagctg aacaataggc tgttcccatg tagccccctg gcctctgtgc cttcttttga 1501 ttatgttttt taaaatattt atctgattaa gttgtctaaa caatgctgat ttggtgacca 1561 actgtcactc attgctgagc ctctgctccc caggggagtt gtgtctgtaa tcgccctact 1621 attcagtggc gagaaataaa gtttgcttag aaaaaaaaaa aaaaaaaaaa aaaaaa //