LOCUS BC028131 3734 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens TATA box binding protein (TBP)-associated factor, RNA
polymerase I, C, 110kDa, mRNA (cDNA clone MGC:39976 IMAGE:5205601),
complete cds.
ACCESSION BC028131
VERSION BC028131.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3734)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3734)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: f Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21536368.
FEATURES Location/Qualifiers
source 1..3734
/db_xref="H-InvDB:HIT000040455"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39976 IMAGE:5205601"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3734
/gene="TAF1C"
/gene_synonym="MGC:39976"
/gene_synonym="SL1"
/gene_synonym="TAFI110"
/gene_synonym="TAFI95"
/db_xref="GeneID:9013"
/db_xref="HGNC:HGNC:11534"
/db_xref="MIM:604905"
CDS 262..2589
/gene="TAF1C"
/gene_synonym="MGC:39976"
/gene_synonym="SL1"
/gene_synonym="TAFI110"
/gene_synonym="TAFI95"
/codon_start=1
/product="TATA box binding protein (TBP)-associated
factor, RNA polymerase I, C, 110kDa"
/protein_id="AAH28131.1"
/db_xref="GeneID:9013"
/db_xref="HGNC:HGNC:11534"
/db_xref="MIM:604905"
/translation="MLPPLIDPWDPGLTARDLLFRGGYRYRKRPRVVLDVTEQISRFL
LDHGDVAFAPLGKLMLENFKLEGAGSRTKKKTVVSVKKLLQDLGGHQPWGCPWAYLSN
RQRRFSILGGPILGTSVASHLAELLHEELVLRWEQLLLDEACTGGALAWVPGRTPQFG
QLVYPAGGAQDRLHFQEVVLTPGDNPQFLGKPGRIQLQGPVRQVVTCTVQGETLLAVR
SDYHCAVWKFGKQWQPTLLQAMQVEKGATGISLSPHLPGELAICSRSGAVCLWSPEDG
LRQIYRDPETLVFRDSSSWRWADFTAHPRVLTVGDRTGVKMLDTQGPPGCGLLLFRLG
AEASCQKGERVLLTQYLGHSSPKCLPPTLHLVCTQFSLYLVDERLPLVPMLKWNHGLP
SPLLLARLLPPPRPSCVQPLLLGGQGGQLQLLHLAEGASVPRLAGPPQSLPSRIDSLP
AFPLLEPKIQWRLQERLKAPTIGLAAVVPPMPSAPTPGLVLFQLSAAGDVFYQQLRPQ
VDSSLRRDAGPPGDTQPDCHAPTASWTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTH
RQMLGSTELRREEEEGQRLGVLRKAMARGQLLLQRDLGSLPAAEPPPAPESGLEDKLS
ERLGEAWAGRGAAWWERQQGRTSEPGRQTRRPKRRTQLSSSFSLSGHVDPSEDTSSPH
SPEWPPADALPLPPTTPPSQELTPDACAQGVPSEQRQMLRDYMAKLPPQRDTPGCATT
PPHSQASSVRATRSQQHTPVLSSSQPLRKKPRMGF"
BASE COUNT 719 a 1158 c 1113 g 744 t
ORIGIN
1 ccggaagacc gtgggtagct gcggcggggc tgacccgtcc cgagtgccaa agctggggtt
61 ctacttgaga tttccctcgt ggtgccaggg tccggcgagc atcacgccga ggcccatttt
121 ccagacgacc acgacgaggc cggggtcacc tggcgagacg cactgactct gccagaggcc
181 cagccccaga actcagagaa tggggcactg catgtgacca aggacctgct gtgggagccg
241 gcaacccctg ggcctctccc catgctgcct cccctcatcg atccctggga ccctggcctg
301 actgcccggg acctgctttt ccgcggaggg taccggtatc ggaagcggcc ccgagtcgtg
361 ctggatgtga ctgagcagat cagccggttc ctcttggatc atggagacgt agcctttgcg
421 cccctgggga agctgatgct ggagaatttc aagctggagg gagcggggag ccgcactaag
481 aagaagacag tggtcagtgt gaagaagctg ctccaggacc tcggtggaca ccagccctgg
541 gggtgtccct gggcttacct cagcaaccga cagcgccgct tctctatcct cgggggcccc
601 atcctgggca cgtcggtggc gagccacttg gcagagctgc tgcacgagga gctggtgctg
661 cggtgggagc agctgcttct ggatgaggcc tgcactgggg gcgcgctggc ctgggttcct
721 ggaaggacac cccagttcgg gcagctggtc taccctgctg gaggcgccca ggacaggctg
781 catttccaag aggtcgttct gaccccaggt gacaatcccc aattccttgg gaaacctgga
841 cgcatccagc tccagggacc tgtccggcaa gtggtgacat gcaccgtcca gggagaaact
901 ctgctggccg tccgctctga ctaccactgt gccgtgtgga agtttggtaa acagtggcag
961 ccaacccttc tgcaggcgat gcaggtggag aaaggggcca cggggatcag cctcagccct
1021 cacctgcccg gggagctggc catctgcagc cgctcgggag ccgtctgcct gtggagccct
1081 gaggatgggc tgcggcaaat ctacagggac cctgagaccc tcgtgttccg ggactcctct
1141 tcgtggcgtt gggcagactt cactgcgcac cctcgggtgc tgaccgtggg tgaccgcacc
1201 ggagtgaaga tgctggacac tcagggcccg ccgggctgtg gtctgttgct ttttcgtttg
1261 ggggcagagg cttcgtgcca gaaaggggaa cgtgtcctgc ttacccagta cctggggcac
1321 tccagcccca aatgcctccc ccctactctt catctcgtct gtacccagtt ctctctctac
1381 ctagtggacg agcgccttcc cctggtgccg atgctgaagt ggaaccatgg cctcccctcc
1441 ccgctcctgc tggcccgact gctgcctccg ccccggccca gctgcgtgca gcccctgctc
1501 ctcggaggcc agggtgggca gctgcagctg ctgcacctgg cagaaggggc gtcggtgccc
1561 cgcctggcag gcccccccca gtctcttcct tccaggatcg actccctccc tgcatttcct
1621 ctgctggagc ctaagatcca gtggcggctg caggagcgcc tgaaagcacc gaccataggt
1681 ctggctgccg tcgtcccgcc catgccctca gcgcccacac caggcctggt gctcttccag
1741 ctctcggcgg cgggagatgt cttctaccag cagctccgcc cccaggtgga ctccagcctc
1801 cgcagagatg ctgggcctcc tggcgacacc caacctgact gccatgcccc cacagcttcc
1861 tggacctccc aggacactgc cggctgcagc cagtggctga aggccctgct aaaagtgccc
1921 ctggctcctc ctgtgtggac agcacccacc ttcacccacc gccagatgct gggcagcaca
1981 gagctgcgga gggaggaaga ggaagggcag cggctgggtg tactccgcaa ggccatggcc
2041 cgagggcagc tcctgctgca gagagacctg ggctccctcc ctgcggcaga gccaccccct
2101 gcacccgagt caggcctaga ggacaagctc agtgagcgcc tgggggaagc ctgggcaggc
2161 cgaggggctg cctggtggga gaggcagcag ggcaggacct cggagcccgg gagacagacc
2221 aggcggccca agcgccggac ccagctgtcc agcagctttt cgctcagtgg ccatgtggat
2281 ccctcagagg acaccagctc ccctcatagc cctgagtggc cacctgctga tgctctgccc
2341 ctgcccccca cgaccccgcc ctcccaggag ttgactccgg atgcatgcgc ccagggcgtc
2401 ccatcagagc agcggcagat gctccgtgac tacatggcca agctaccacc ccagagggac
2461 accccaggct gtgccaccac acctccccac tcccaggcct ccagcgtccg ggccactcgc
2521 tcccagcagc acacacccgt cctctctagc tctcagcccc tccgtaagaa gcctcgaatg
2581 ggcttctgag gacacaaggt gggctgccct caagccccag agagcccctc atccttcctc
2641 tgggaccaga tgtgccttcc acagttgaaa cttgagaagc agagctcgcc accttctgga
2701 ggccactgtg atgatgagcc aagcaatttg gagccaagtt gaagggacag ggcaacaaaa
2761 tacagtagta gtttcttttg tattttgtat attcgcctga agatcatccc gcaaggcagg
2821 ctggaggtgc cggtgggcct gtgttgctgg gattttagtc tgtgctggga ggcagggctc
2881 cgctgcgcct cagctgtggg ggcctcaggc aggtccctca gttctcacgc cttcctgtcc
2941 agtggaatgg gggccaggag tgctggctcc tcgtgtttgg tgagggtgga gtgaggcccc
3001 tgcagagctg ctgatgaggt gggcacaacg gccgttggca gctgctgttg tgggttgctt
3061 tgtcaatctc tgccccggtc tgatgtttcc tacagggaga tgccttggat ccaggttcag
3121 ggactaaata cacttggcag ctgaagatga attggaatgg tcacgtgttt taggctggac
3181 agcgtcccgc cacagctact acctgacact gagctcatgc agagagatga tggctgatgt
3241 tccttctccc ttgggacatg ggtctggcac ctgtgggctg tcgatagtgc cctctgagca
3301 gagggtcacg gtcatgtcag tttgggggaa ttctctgttg tgcctcacag actcccccct
3361 ttctttcctc cctccccttc tcattttgat gtctaaagca tcaagtccct cttcctcgga
3421 gtttctctag ctgcagtgga agattctgtt ttcctgtggg gaaaatgctc acttgagatt
3481 ttgcagggac ccgggtctgt ctggtttctg atgacatagt aagagaaagg tcttttttca
3541 ggttggctgg tgaaaggaat tgcatgtgac tcacacaaac aggagctagc ccaatcatac
3601 actgactcgc gtgggtgtta aaatgtttat catgcctaag ggagacattt ataattaaac
3661 catttatgct acataaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3721 aaaaaaaaaa aaaa
//