LOCUS BC028125 1888 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens nucleoporin 50kDa, mRNA (cDNA clone MGC:39961 IMAGE:5166132), complete cds. ACCESSION BC028125 VERSION BC028125.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1888) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1888) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 62 Row: d Column: 15 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 24497446. FEATURES Location/Qualifiers source 1..1888 /db_xref="H-InvDB:HIT000040452" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:39961 IMAGE:5166132" /tissue_type="Brain, adult medulla" /clone_lib="NIH_MGC_119" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1888 /gene="NUP50" /gene_synonym="MGC39961" /gene_synonym="NPAP60" /db_xref="GeneID:10762" /db_xref="HGNC:HGNC:8065" /db_xref="MIM:604646" CDS 373..1695 /gene="NUP50" /gene_synonym="MGC39961" /gene_synonym="NPAP60" /codon_start=1 /product="nucleoporin 50kDa" /protein_id="AAH28125.1" /db_xref="GeneID:10762" /db_xref="HGNC:HGNC:8065" /db_xref="MIM:604646" /translation="MASEEVLKNRAIKKAKRRNVGFESDTGGAFKGFKGLVVPSGGGR FSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANGPTTLVDKVSN PKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPLCDLTPIFK DYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHGNKTEDT PDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNSSLFG KDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYSKK CKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA" BASE COUNT 586 a 400 c 453 g 449 t ORIGIN 1 gccccggctg tttttgaagc ggggcccggg cctcaccggg ctgcggcgtc cgactcgagt 61 gagactctcc cctgcggccc cgccggaggt tcgaaaacat ggccaaaaga aatgccgaga 121 aggaactgac agataggaat tgggatcaag aagatgaagc tgaagagggt aaaagaaggg 181 ctataaacta aagccgaaga tattcagcag ctttctgacg tggacatcag aagtgtggac 241 atgagtgtgc tttgagcgca ctgtggaaga gcagtggttg tccagcaagg tcctaggtgc 301 ctccgtggcc tttcgtacag tgggcaagtt gggcaggact catcttaaaa atcatgtgtg 361 ggaacattct ccatggccag tgaggaagtc ttgaagaata gagccataaa gaaagcaaag 421 cgcagaaatg ttggatttga atctgacact ggaggagcct ttaaaggttt taaaggtttg 481 gtggtacctt ctggaggagg acgcttttct ggatttggta gtggcgctgg agggaagcct 541 ttggaaggac tgtcgaatgg aaacaacata accagtgccc ctcccttcgc cagtgcaaag 601 gcagcggcag atcccaaggt agcctttggt tctcttgctg caaatggccc taccaccttg 661 gttgataaag tttcaaatcc caaaactaat ggggacagtc agcagccctc ctcctctggc 721 cttgcttcca gtaaagcttg tgtcggaaat gcctatcaca agcagttggc cgccttgaac 781 tgctccgtgc gggattggat agtgaagcac gtgaatacaa accccctctg tgatctgaca 841 cctatcttta aagactatga gaaatattta gcaaacattg aacagcaaca cgggaacagt 901 ggcaggaatt ctgaaagtga atctaacaaa gtggcagctg aaacacagtc tccttccctt 961 tttggctcaa caaaattaca gcaagagtca acgtttttgt ttcatggcaa caaaactgaa 1021 gatacacctg acaagaagat ggaggtggca tctgaaaaga aaacggaccc atcatcacta 1081 ggagcgacaa gtgcctcatt taatttcggc aagaaagttg atagctctgt tttgggctca 1141 ttaagctctg tccccctgac tggattttct ttctcccctg gaaactccag tttatttggc 1201 aaagatacta cccagagtaa accagtctct tcaccatttc ccactaaacc attggagggc 1261 caagcagaag gtgacagtgg tgaatgcaaa ggtggagatg aagaagagaa tgatgagcca 1321 cccaaagtag tagttaccga agtaaaagaa gaagatgctt tttactccaa aaagtgtaaa 1381 ctgttttaca agaaagacaa tgagtttaaa gagaaaggca taggtactct gcatttaaaa 1441 cctacagcaa atcagaagac acagcttttg gtgcgggcag acaccaattt aggcaacata 1501 ttgctgaacg ttctgattcc acccaatatg ccatgtacgc gaacagggaa gaataacgtt 1561 cttatcgtct gtgttccaaa tccaccaatt gacgagaaga atgccaccat gccagtcacc 1621 atgttgattc gggtaaaaac cagcgaggat gcagacgagt tgcacaaaat tttactggag 1681 aaaaaggatg cctgaacacg caaagtcggc tgcagaatta ttgccaagtt tttttgctgc 1741 ttccaccgcc ccttaaagtt agtcagtttt tcttctcttc tttgacattc taagaactta 1801 tagataactt aaaacttttg tgaggaagat taatgtggcc aataaaacct ttaaatgtta 1861 aaaaaaaaaa aaaaaaaaaa aaaaaaaa //