LOCUS BC028107 1896 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens neuronal PAS domain protein 2, mRNA (cDNA clone
IMAGE:5248433), partial cds.
ACCESSION BC028107
VERSION BC028107.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1896)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1896)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: o Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48928051.
FEATURES Location/Qualifiers
source 1..1896
/db_xref="H-InvDB:HIT000091492"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5248433"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>1896
/gene="NPAS2"
/gene_synonym="MOP4"
/gene_synonym="PASD4"
/db_xref="GeneID:4862"
/db_xref="HGNC:HGNC:7895"
/db_xref="MIM:603347"
CDS 30..>1896
/gene="NPAS2"
/gene_synonym="MOP4"
/gene_synonym="PASD4"
/codon_start=1
/product="NPAS2 protein"
/protein_id="AAH28107.1"
/db_xref="GeneID:4862"
/db_xref="HGNC:HGNC:7895"
/db_xref="MIM:603347"
/translation="MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMD
KTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFIIAVTT
DGSIIYVSDSITPLLGHLPSDVMDQNLLNFLPEQEHSEVYKILSSHMLVTDSPSPEYL
KSDSDLEFYCHLLRGSLNPKEFPTYEYIKFVGNFRSYNNVPSPSCNGFDNTLSRPCRV
PLGKEVCFIATVRLATPQFLKEMCIVDEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLP
FEVLGTSGYDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITY
HQWNSKPEFIVCTHSVVSYADVRVERRQELALEDPPSEALHSSALKDKGSSLEPRQHF
NALDVGASGLNTSHSPSASSRSSHKSSHTAMSEPTSTPTKLMAEASTPALPRSATLPQ
ELPVPGLSQAATMPAPLPSPSSCDLTQQLLPQTVLQSTPAPMAQFSAQFSMFQTIKDQ
LEQRTRILQANIRWQQEELHKIQEQLCLVQDSNVQMFLQQPAVSLSFSSTQRPEAQQQ
LQQRSAAVTQPQLGAGPQLPGQISSAQVTSQHLLRESSVISTQGPKPMRSSQLMQS"
BASE COUNT 507 a 549 c 434 g 406 t
ORIGIN
1 ctccgaggaa aaactgcata gaaaatctaa tggatgaaga tgagaaagac agagccaaga
61 gagcttctcg aaacaagtct gagaagaagc gtcgggacca gttcaatgtt ctcatcaaag
121 agctcagttc catgctccct ggcaacacgc ggaaaatgga caaaaccacc gtgttggaaa
181 aggtcatcgg atttttgcag aaacacaatg aagtctcagc gcaaacggaa atctgtgaca
241 ttcagcaaga ctggaagcct tcattcctca gtaatgaaga attcacccag ctgatgttgg
301 aggcattaga tggcttcatt atcgcagtga caacagacgg cagcatcatc tatgtctctg
361 acagtatcac gcctctcctt gggcatttac cgtcggatgt catggatcag aatttgttaa
421 atttcctccc agaacaagaa cattcagaag tttataaaat cctttcttcc catatgcttg
481 tgacggattc cccctcccca gaatacttaa aatctgacag cgatttagag ttttattgcc
541 atcttctcag aggcagcttg aacccaaagg aatttccaac ttatgaatac ataaaatttg
601 taggaaattt tcgctcttac aacaatgtgc ctagcccctc ctgtaatggt tttgacaaca
661 ccctttcaag accttgccgg gtgccactag gaaaggaggt ttgcttcatt gccaccgttc
721 gtctggcaac accacaattc ttaaaggaaa tgtgcatagt tgacgaacct ttagaggaat
781 tcacttcaag gcatagcttg gaatggaaat ttttatttct ggatcacaga gcacctccaa
841 tcataggata cctgcctttt gaagtgctgg gaacctcagg ctatgactac taccacattg
901 atgacctgga gctcctggcc aggtgtcacc agcacctgat gcagtttggc aaagggaagt
961 cgtgttgcta ccggtttctg accaaaggtc agcagtggat ctggctgcag actcactact
1021 acatcaccta ccatcagtgg aactccaagc ccgagttcat cgtgtgcaca cactcggtgg
1081 tcagttacgc agatgtccgg gtggaaagga ggcaggagct ggctctggaa gacccgccat
1141 ccgaggccct ccactcctca gcactaaagg acaagggctc aagcctggaa cctcggcagc
1201 actttaacgc actcgacgtg ggtgcctcgg gccttaatac cagtcattcg ccatcggcgt
1261 cctcaagaag ttcccacaaa tcctcgcaca cagccatgtc agaacccacc tccactccca
1321 ccaagctgat ggcagaggcc agcaccccgg ctttgccaag atcagccacc ctgccccaag
1381 agttacctgt ccccgggctc agccaggcag ccaccatgcc ggcccctctg ccttccccat
1441 cgtcctgcga cctcacacag cagctcctgc ctcagaccgt tctgcagagc acgcccgctc
1501 ccatggcaca gttttcggca cagttcagca tgttccagac catcaaagac cagctagagc
1561 agcggacgcg gatcctgcag gccaatatcc ggtggcaaca ggaagagctc cacaagatcc
1621 aggagcagct ctgcctggtc caggactcca acgtccagat gttcctgcag cagccagctg
1681 tatccctgag cttcagcagc acccagcgac ctgaggctca gcagcagcta cagcaaaggt
1741 cagctgcagt gactcagccc cagctcgggg cgggccccca acttccaggg cagatctcct
1801 ctgcccaggt cacaagccag cacctgctca gagaatcaag tgtgatatca acccagggtc
1861 caaagccaat gagaagctca cagctaatgc agagca
//