LOCUS BC028104 1631 bp mRNA linear HUM 27-OCT-2006
DEFINITION Homo sapiens SET and MYND domain containing 2, mRNA (cDNA clone
IMAGE:5246939), partial cds.
ACCESSION BC028104
VERSION BC028104.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1631)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1631)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: o Column: 2.
FEATURES Location/Qualifiers
source 1..1631
/db_xref="H-InvDB:HIT000091489"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5246939"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1631
/gene="SMYD2"
/gene_synonym="HSKM-B"
/gene_synonym="ZMYND14"
/db_xref="GeneID:56950"
/db_xref="HGNC:HGNC:20982"
CDS <1..1256
/gene="SMYD2"
/gene_synonym="HSKM-B"
/gene_synonym="ZMYND14"
/codon_start=3
/product="SMYD2 protein"
/protein_id="AAH28104.1"
/db_xref="GeneID:56950"
/db_xref="HGNC:HGNC:20982"
/translation="APRRHHEGRGPRRPGALLQPGQRPGAAGSAALPGGGLAVLLPGL
CLRAHGQRAGQPLRVLLHQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKI
HPERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLF
AQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGE
EVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIR
DMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVC
LYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKA
IAIMEVAHGKDHPYISEIKQEMESH"
BASE COUNT 489 a 355 c 386 g 401 t
ORIGIN
1 ccgcgccccg ccgccaccat gagggccgag ggcctcggcg gcctggagcg cttctgcagc
61 ccgggcaaag gccgggggct gcgggctctg cagcccttcc aggtggggga cttgctgttc
121 tcctgcccgg cctatgccta cgtgctcacg gtcaacgagc ggggcaacca ctgcgagtac
181 tgcttcacca gaaagaagat tggcccatgc acaagctgga atgttctccc atggttgttt
241 ttggggaaaa ctggaatccc tcggagactg taagactaac agcaaggatt ctggccaaac
301 agaaaatcca cccagagaga acaccttcgg aaaaattgtt agctgtgaag gagtttgaat
361 cacatctgga taagttagac aatgagaaga aggatttgat tcagagtgac atagctgctc
421 tccatcactt ttactccaag catctcggat tccctgacaa tgatagcctc gtagtactct
481 ttgcacaggt taactgtaat ggcttcacaa ttgaagatga agaactttct catttgggat
541 cagcgatatt tcctgatgtt gcattgatga atcatagctg ttgccccaat gtcattgtga
601 cctacaaagg gaccctggca gaagtcagag ctgtacagga aatcaagccg ggagaggagg
661 tttttaccag ctatattgat ctcctgtacc caacggaaga tagaaatgac cggttaagag
721 attcttattt ctttacctgt gagtgccagg agtgtaccac caaggacaag gataaggcca
781 aggtggaaat ccggaagctc agcgatcccc caaaggcaga agccatccga gacatggtca
841 gatatgcacg caacgtcatt gaagagttcc ggagggccaa gcactataaa tcccctagtg
901 agctgctgga gatctgcgag ctcagccagg agaagatgag ctctgtgttt gaggacagta
961 acgtgtacat gttgcacatg atgtaccagg ccatgggtgt ctgcttgtac atgcaggact
1021 gggaaggagc cctgcaatat ggacagaaaa tcattaagcc ctacagtaag cactatcctt
1081 tgtactccct caacgtggcc tccatgtggt tgaagctagg gagactctac atgggcctgg
1141 aacacaaagc cgcaggggag aaagccctga agaaggccat tgcaatcatg gaagtagctc
1201 acggcaaaga tcatccatat atttctgaga tcaaacagga aatggaaagc cactgaaact
1261 atgcagcatt tcagttttca tttaaacact tagttcagaa accttaaagg atttgaatat
1321 ttcaaattgc acacgtcact ccagcatctc tgtaaaataa ttggaatgaa aatacttctt
1381 gcacttaaac actgcacatg ccgtactttg aggttagtct gaatcttgaa ctttaatacc
1441 aaattaattt tgaatgcttt tgtttcctaa gagataatgg catggtttca tatgttatac
1501 tttggacaga cagagtttta aaaatggaat tattttttct ttcatgcctc ttgtaatgtt
1561 ctgaacaaac ttgaatgatg aaagtattaa agagatatca gtaaaaaaaa aaaaaaaaaa
1621 aaaaaaaaaa a
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