LOCUS BC028041 2322 bp mRNA linear HUM 16-FEB-2007
DEFINITION Homo sapiens nuclear RNA export factor 1, mRNA (cDNA clone
MGC:40096 IMAGE:5248449), complete cds.
ACCESSION BC028041
VERSION BC028041.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2322)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2322)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: o Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..2322
/db_xref="H-InvDB:HIT000040415"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:40096 IMAGE:5248449"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2322
/gene="NXF1"
/gene_synonym="MEX67"
/gene_synonym="TAP"
/db_xref="GeneID:10482"
/db_xref="HGNC:HGNC:8071"
/db_xref="MIM:602647"
CDS 67..1926
/gene="NXF1"
/gene_synonym="MEX67"
/gene_synonym="TAP"
/codon_start=1
/product="nuclear RNA export factor 1"
/protein_id="AAH28041.1"
/db_xref="GeneID:10482"
/db_xref="HGNC:HGNC:8071"
/db_xref="MIM:602647"
/translation="MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGG
SGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAP
PERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQ
FFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSK
RYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNR
LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQ
STYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQ
QYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTL
RFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRD
SLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSPVPTLSPE
QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFMK"
BASE COUNT 624 a 592 c 568 g 538 t
ORIGIN
1 tgggagttag gttgtttgcc ggcgtagcgg ccagcgcctg agcccgccct tgatcttcgc
61 tgtggcatgg cggacgaggg gaagtcgtac agcgaacacg atgatgaacg cgttaatttc
121 cctcaaagaa agaagaaagg ccggggtccc ttccggtgga aatatggtga aggaaaccgt
181 aggtctggaa gaggcggttc tggtattcgg tcttcccgcc ttgaggaaga tgatggagat
241 gtggcaatga gtgatgccca ggatggtccc cgagtacgat acaaccccta taccacccga
301 cctaaccgtc ggggtgatac ttggcatgat cgagatcgca ttcatgttac tgtgcggaga
361 gacagagctc ctccagagag aggaggggct ggcaccagcc aggatgggac ctcaaagaac
421 tggttcaaga ttacaattcc ttatggcaga aagtatgaca aggcatggct cctgagcatg
481 attcagagca agtgcagtgt gcccttcacc cctattgagt ttcactatga gaatacacgg
541 gcccagttct tcgttgaaga cgccagtact gcctctgcat tgaaggctgt caactataag
601 attttggatc gggagaaccg aaggatatct atcatcatca actcttctgc tccaccccac
661 actatactga atgaactgaa gccagaacaa gtagaacagc taaagctgat catgagcaaa
721 cgatacgatg gctcccaaca agcccttgac ctcaaaggcc tccgttcaga cccagatttg
781 gtggcccaga acattgacgt tgtcctgaat cgcagaagct gtatggcagc taccctgagg
841 atcattgaag agaacatccc tgagctattg tccttgaact tgagcaacaa caggctgtac
901 aggctggatg acatgtctag cattgttcag aaggcaccca acctgaagat cctaaacctt
961 tctggaaatg aattgaagtc tgagcgggaa ttggacaaga taaaggggct gaagctagaa
1021 gagctctggc tcgatggaaa ctccctgtgt gacaccttcc gagaccagtc cacctacatc
1081 agcgccattc gcgaacgatt tcccaagtta ctacgcctgg atggccatga gctaccccca
1141 ccaattgcct ttgatgttga agcccccacg acgttaccgc cctgcaaggg aagctatttt
1201 ggaacagaaa acttgaagag tctggtcttg cacttcctgc aacagtacta tgcaatttac
1261 gactctggag accgacaagg gctcctggat gcctaccatg atggggcctg ctgttccctg
1321 agcattcctt tcattcctca gaaccctgcc cgaagcagct tagccgagta tttcaaggat
1381 agcagaaatg tgaagaagct taaagaccct accttgcggt tccggctgct gaagcacacg
1441 cgtctcaacg ttgttgcctt cctcaatgag ttgcccaaaa cccagcacga cgtcaattcc
1501 ttcgtggtag acataagcgc ccagacaagc acattgctgt gtttttctgt caatggagtc
1561 ttcaaggaag tggacggaaa gtcccgggat tctttgcgag ccttcacccg gacattcatt
1621 gctgttcctg ctagcaattc agggctatgt attgtaaatg atgagctatt tgtgcggaat
1681 gccagttctg aagagatcca aagagccttc gctatgcctg cacccacgcc ttcctccagc
1741 ccggtgccca ccctctctcc agagcagcag gaaatgttgc aagcattctc tacccagtct
1801 ggcatgaacc tcgagtggtc ccagaagtgc cttcaggaca acaactggga ctacaccaga
1861 tctgcccagg ccttcactca tctcaaggcc aagggcgaga tcccagaagt ggcattcatg
1921 aagtgatcgt agtcatgcct cagaagcagt cccccctgta aatagtcctt ggatattacc
1981 gtctggttgt cgtctgtcat ctcctcctgt ctggcccgag gccgccccgt gactgtgacc
2041 gagggaggga gggctgcctg atccctctcc tcgcctgcct tctggaagac ttcagaagat
2101 tgagcctcac tggtgccagg aagccaaagc ttactttgta gaactgacac taaactaccc
2161 gaaggactta ggtgctttgt gtacttaacc ccaggacctc cttacttttt aatataaaga
2221 gtgatgttgt atttcgtgtt ctgcactttt taatataaag agtgatgttg taaaaaaaaa
2281 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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