LOCUS BC028025 2680 bp mRNA linear HUM 18-AUG-2006
DEFINITION Homo sapiens integrator complex subunit 5, mRNA (cDNA clone
IMAGE:4179788), partial cds.
ACCESSION BC028025
VERSION BC028025.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2680)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2680)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: k Column: 13.
FEATURES Location/Qualifiers
source 1..2680
/db_xref="H-InvDB:HIT000091453"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4179788"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2680
/gene="INTS5"
/gene_synonym="INT5"
/db_xref="GeneID:80789"
/db_xref="HGNC:HGNC:29352"
CDS <1..2502
/gene="INTS5"
/gene_synonym="INT5"
/codon_start=1
/product="INTS5 protein"
/protein_id="AAH28025.1"
/db_xref="GeneID:80789"
/db_xref="HGNC:HGNC:29352"
/translation="PRVRDIYVQCLSALIGSCPDACVDALLDTSVQHSPHFDWVVAHI
GSSFPGTIISRVLSCGLKDFCVHGGAGGGAGSSGGSSSQTPSTDPFPGSPAIPAEKRV
PKIASVVGILGHLASRHGDSIRRELLRMFHDSLAGGSGGRSGDPSLQATVPFLLQLAV
MSPALLGTVSGELVDCLKPPAVLSQLQQHLQGFPREELDNMLNLAVHLVSQASGAGAY
RLLQFLVDTAMPASVITTQGLAVPDTVREACDRLIQLLLLHLQKLVHHRGGSPGEGVL
GPPPPPRLVPFLDALKNHVGELCGETLRLERKRFLWQHQLLGLLSVYTRPSCGPEALG
HLLSRARSPEELSLATQLYAGLVVSLSGLLPLAFRSCLARVHAGTLQPPFTARFLRNL
ALLVGWEQQGGEGPAALGAHFGESASAHLSDLAPLLLHPEEEVAEAAASLLAICPFPS
EALSPSQLLGLVRAGVHRFFASLRLHGPPGVASACQLLTRLSQTSPAGLKAVLQLLVE
GALHRGNTELFGGQVDGDNETLSVVSASLASASLLDTNRRHTAAVPGPGGIWSVFHAG
VIGRGLKPPKFVQSRNQQEVIYNTQSLLSLLVHCCSAPGGTECGECWGAPILSPEAAK
AVAVTLVESVCPDAAGAELAWPPEEHARATVERDLRIGRRFREQPLLFELLKLVAAAP
PALCYCSVLLRGLLAALLGHWEASRHPDTTHSPWHLEASCTLVAVMAEGSLLPPALGN
MHEVFSQLAPFEVRLLLLSVWGFLREHGPLPQKFIFQSERGRFIRDFSREGGGEGGPH
LAVLHSVLHRNIDRLGLFSGRFQAPSPSTLLRQGT"
BASE COUNT 459 a 804 c 774 g 643 t
ORIGIN
1 ccacgcgtcc gggacatcta tgtgcagtgc ctctcggctc tcattggtag ctgcccagat
61 gcgtgtgtgg atgccttgct ggatacctct gttcagcatt ctccacactt tgactgggtt
121 gtggcacata ttggctcctc ttttcctggc accatcattt cccgggttct ctcctgtggc
181 cttaaggact tttgtgtcca tggtggggct ggaggtggag ctggcagtag tggtggaagc
241 tcttctcaga ccccctctac agaccccttc cctggatctc ctgccattcc tgcggagaaa
301 cgggtgccca agattgcctc agttgtaggc atcctaggtc acctggcctc ccgccacgga
361 gatagcatcc gacgggagct cctgcgaatg ttccatgata gcctggcagg gggatctgga
421 ggccgcagtg gggacccctc ccttcaggcc acggttccgt tcctactgca gctggcagtc
481 atgtcaccag ctttgctggg cactgtctct ggagagcttg tggattgcct caagccccca
541 gctgtgctga gccagctgca gcaacacctt caaggattcc cccgagagga gctggacaac
601 atgttgaacc tggctgtgca cctggtgagc caggcctctg gggcaggtgc ctaccgcttg
661 ctgcagttcc tggtggacac agctatgcct gcttcggtca ttaccaccca gggcctggct
721 gtgccagaca ccgtgcgtga ggcttgtgac cggctaatcc agctgctgct gctgcacctg
781 caaaaactgg ttcatcaccg gggagggtct cctggggaag gggtgctagg cccgccccca
841 cctccccgct tggtgccctt tttagatgcg ctcaaaaacc atgttggaga gctgtgtgga
901 gagacgttac gattggaacg gaagcgcttc ctctggcagc accagctctt gggcctgctg
961 tctgtctata cccggcctag ctgtggacct gaggccttgg gccatctgct gagccgagcc
1021 cgaagccctg aagagttgag tttggccacc cagttatatg cagggctagt ggtcagcctc
1081 tctggcctcc tgcccctggc tttccgaagc tgtctggctc gggtgcatgc agggacatta
1141 cagcctccct tcacggcccg gttcctgcgc aacttggcac tgctagtagg gtgggaacag
1201 cagggtggcg agggccctgc agccctaggg gcgcactttg gggaatctgc ctcagcccat
1261 ctgtctgacc tggctcctct cctgctacat cctgaggagg aagtagctga agctgctgcc
1321 tctctcctgg ccatttgtcc ctttccttct gaagccttat ccccctccca gctcctggga
1381 ctggtaaggg ctggggtgca ccgcttcttt gcctctctga ggctgcatgg acccccaggt
1441 gtggcctcag cctgtcagct tctcacccgc ctgtctcaga catccccagc tgggctcaag
1501 gctgtcctgc agctgctggt tgaaggagcc ttacatcgag gcaacacaga actgtttggt
1561 gggcaagtag atggggacaa tgagactctc tcagttgttt cagcttcttt ggcttctgcc
1621 tccctgttgg acactaaccg gaggcacact gcagctgtgc caggtcctgg agggatttgg
1681 tcagttttcc atgctggagt catcggccgt ggcttaaagc cacccaagtt tgtccagtca
1741 cgaaatcagc aggaagtgat ctataacacc cagagcctcc tcagcctcct ggttcactgc
1801 tgcagtgccc cagggggcac tgaatgtggg gaatgctggg gggcacccat cttgagtcca
1861 gaggcagcca aagcagtggc agtgaccttg gtggagagtg tgtgtcccga tgcagctggt
1921 gcagagctgg cctggccccc cgaggaacac gcccgggcca ccgtggagcg ggatctccgc
1981 attggccggc gcttccgcga acagcccctg ctctttgagc tgttaaagct ggtagcagct
2041 gcacccccag ccctgtgcta ctgttccgtg ctgcttcggg ggctgctggc cgccctcttg
2101 ggccattggg aagcctctcg ccaccctgac acgacccact ccccctggca cctggaggca
2161 tcctgcacct tagtggctgt catggctgag ggaagcctcc tgcctccggc cctgggtaat
2221 atgcatgaag tatttagcca actggcacct ttcgaggtgc gtctgctgct gctcagtgtc
2281 tggggttttc tccgggagca tgggcccttg cctcagaagt tcatcttcca atcagagcgg
2341 ggtcgcttca ttcgggactt ctccagggag ggtggaggtg agggtggacc ccatctggct
2401 gtgctgcaca gtgtcctcca ccgcaacatc gaccgcctag gtcttttctc tggccgtttc
2461 caggcacctt caccgtccac tctccttcga caggggacgt agccttttct tgctctggaa
2521 gcccagggag gttgagcagt gagagaggga agggactaac gtgctccgga agggtggagg
2581 tttctcttct aagtccttgg tctaaagagc gctgtcactt ttttctctcc cacttttttt
2641 tttctaaata aaatttgcca acttgaaaaa aaaaaaaaaa
//