LOCUS BC027936 3523 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens chromosome X open reading frame 22, mRNA (cDNA clone
MGC:34831 IMAGE:5202137), complete cds.
ACCESSION BC027936
VERSION BC027936.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3523)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3523)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: d Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22749290
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..3523
/db_xref="H-InvDB:HIT000040364"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34831 IMAGE:5202137"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3523
/gene="CXorf22"
/db_xref="GeneID:170063"
/db_xref="HGNC:HGNC:28546"
CDS 20..2284
/gene="CXorf22"
/codon_start=1
/product="CXorf22 protein"
/protein_id="AAH27936.1"
/db_xref="GeneID:170063"
/db_xref="HGNC:HGNC:28546"
/translation="MNTQKGSLTINVHRGSLAMSIQRGSLVPRDMDSSGRDMQLRVIP
AEVKFLDTMAGRVYRLPITVHNICRWNQKIRFKEPVKPQFKLMLTSLDKELASGLQMT
AMVEYHPDKDEDTFDRLLISIENKTTEIPLIGLIPSCQLEIESVVNFGTLVANSKVYS
KEITITNHGKAPGIFKAEYHGQLPILIFPTSGIVDAKSSMVIKVDFCADQPRIVDEEA
IVILQGQPEMLLSIKAHVVEQIIELLSMSSDRRLECIHFGPVFFGSSKIKHARVYNNS
PEPINWVAIIQDDAVGEELGTDIQQRTDIALNNLTYIRKIKNIDTTIIISCLPNEGTL
QPYQKTVITFCFTPKLMAVGKKDIGPSYRQDYALFLRFESVGSKDGFLRDDDYKTIKS
ERFQKVELALTGTGLPVLLQFDPGPVLNFKPCFMGERSEIQCIIKNQCELLPVTYHFK
KTANFEIDPEKGKITGGGMVDVMCSFVPHQLGVFKVKQMIEIIGLVAEEDLQSLSVKS
FHHVYLAFNSICKASTKKVVMKFDPGILPSIRNPTGKFVVKDLAKRKNYAPVAMLQSA
MTRTHNHRSCEEPVKDMLLAFPNDRAATIRSKDHHKHFRPIFTKVPRFNYVNHDFAYT
TFEKQQKKLYENYYAMYLKYLRSVRLQKKQAERERMYSYDDTDIGLEPGSGLKSPSLS
EAEIEEELSSAANSIRANRLLTTRGIASQEEESVRRKVLKGLKSEPSTPQEKHDCSLM
LTPKQIHQVIVVRY"
BASE COUNT 1171 a 639 c 699 g 1014 t
ORIGIN
1 ggctaccgag agggcagcca tgaacaccca aaagggttcc ctcaccataa acgtccacag
61 aggttccctc gccatgagca tccaaagggg ttccctcgtc ccccgggata tggatagctc
121 gggtagagac atgcagctgc gggtgatccc ggctgaggtg aagttcctgg acacgatggc
181 cgggagggtg taccgcctcc cgattactgt gcataatatt tgccgctgga accagaaaat
241 ccgatttaag gagcccgtca agccacagtt caaactgatg ttgaccagtc tggataaaga
301 acttgcttct ggccttcaga tgacagctat ggtggaatat catcctgata aagacgaaga
361 cacttttgac cggctactta tttcaataga aaataaaaca acagaaattc ctctaattgg
421 gttgattcca tcctgtcaat tggaaattga atcagtagtt aattttggca cactggttgc
481 caatagtaaa gtatattcta aagagattac tatcactaac catggcaaag ctccaggcat
541 atttaaggca gaataccacg gccaattacc catcctcatt tttccaacta gtggtatcgt
601 ggatgctaag tcatcaatgg ttattaaagt agatttctgt gcagaccagc caagaattgt
661 agatgaagag gcaatagtga ttttgcaagg tcaacctgag atgctcttga gtatcaaagc
721 tcatgtggtt gagcagatta ttgaattatt aagcatgagt agtgacagaa ggctggaatg
781 catacacttt ggtcctgttt tcttcggatc atcaaaaatt aaacatgcac gtgtatacaa
841 taatagccca gagcccataa attgggtggc catcatacaa gatgatgccg tgggagaaga
901 attgggtaca gatattcaac aaagaacaga tattgcttta aataatctca cctacataag
961 aaaaataaag aacatagata ctactatcat tatctcctgt cttcctaatg aagggacttt
1021 acaaccttat caaaagactg taattacatt ttgtttcacc ccaaagctaa tggctgttgg
1081 taaaaaggat attggacctt catacagaca ggactatgct ctctttttga gatttgagtc
1141 cgtaggaagt aaagatggat ttttgagaga tgatgactat aaaaccatca aaagtgaacg
1201 atttcagaaa gtggaattag cactgacagg cacaggactt cctgttttac tacagtttga
1261 tccaggacca gttcttaatt ttaaaccttg tttcatgggt gaacgttcag aaattcagtg
1321 catcataaaa aatcaatgcg aattacttcc tgtgacgtac cactttaaaa aaactgcaaa
1381 ttttgaaatt gatcctgaaa agggcaagat tactggaggg ggtatggtgg atgtgatgtg
1441 ttcatttgtt ccacatcaac ttggagtctt caaagtgaag cagatgatag agattattgg
1501 tttagtggca gaagaagatt tgcaatcttt gtcggtaaaa tctttccatc acgtatattt
1561 agctttcaac agcatctgta aagcttccac caagaaagtt gtgatgaaat ttgatcctgg
1621 tatattgcct tcgatccgta atcccacggg aaagtttgtg gtcaaagact tggcaaaacg
1681 caagaattat gcacctgtag caatgcttca atcagccatg acacgcactc acaatcatcg
1741 ctcatgtgaa gagccagtga aggatatgct attagccttt cccaatgacc gagctgcaac
1801 tatcaggtct aaagaccatc ataaacattt caggccaatt ttcacaaaag ttccaagatt
1861 taactatgtg aatcatgatt ttgcatatac tacatttgaa aaacagcaaa agaaattata
1921 tgaaaactat tatgcaatgt atcttaaata tttaagaagt gtgcgcttgc agaagaaaca
1981 agcagagagg gagcgcatgt attcatatga tgatacagac ataggcttag agccaggatc
2041 aggtctaaag tcaccctcac tctcagaagc ggaaatagaa gaggagctgt cttcagcagc
2101 aaattcaatt agagcgaatc gattgttaac caccaggggt atagcatctc aggaggaaga
2161 gtctgtgaga agaaaggttc tcaaaggact taaatcagaa ccatccactc cacaagaaaa
2221 acatgattgc agcttaatgt tgacaccaaa gcaaattcat caagtaattg ttgttagata
2281 ctgatttaga agaacttcag aagaccaacc aattttcata cgtgattcta cctacatcca
2341 gtacttatat ttcaatggta tctgactctc ccaccattgg aaaattttgg aagtctttca
2401 cctttacagt gaacaatgta cccagtggac acatcctagt ggtggcagtt gtccagccag
2461 taacacttga gctatcttct aatgagctag tattgagacc acgaggcttc ttcatgaaaa
2521 catgttttcg ggggacagtt agattgtata atcgtcagaa ttgttgtgct cagtttcaat
2581 ggcaacccgt aaacacagga agagggatag cattttctat ttgtccagct aaaggcactg
2641 ttgaagcata ttcctcactg gaatgtgaag taacttggca gcagggcttc agttctccag
2701 aagaaggaga atttattctt catgtctttc aaggaaacgc gttgaagcta aaatgtgttg
2761 cacatgtaat tattttcctt gaacatggtt tttgttttga gggctatgaa tttgttgggt
2821 atacactggt gtatatagtt acctatatct agaattaact gtaaaaccca agactttcat
2881 gcaacagtac tagttttttt gttagagcct ctataaatat gtaatatcat catgggagcc
2941 attgaaatga aattatttta ttaagagaca caaaaagtat tttcagagaa tatacttgat
3001 ggattaaaaa tgtgagtaga gggaaagctg taatatgcaa ttttaacctt tttctggtac
3061 agtccagagg gccttaaatt catgactcaa tcaccaagca tgattttaca tgtgtaccaa
3121 atttcccact caatgttctt agaaatatta aagaagccaa atgctctttt actaaacccc
3181 atctatattt ctaggacatg atgatactct tacatatttc agctgtggag gagtttttag
3241 cctcaagaga tgagaaattc atctactttt agtgatggca agtgacagaa ctcagtatgg
3301 tttttcttct aagcctaaaa taagctgggt cctactactt ttcattatgt gtaaattagt
3361 tttatttttt aaaaactttc tattgaagta taacatgcat atgtatatgt atatgtggag
3421 aaacatgaag tgattaaata aaatattcat ttgtttgtca ttcatataaa aaaaaaaaaa
3481 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aag
//