LOCUS BC027935 2139 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens chromosome 19 open reading frame 47, mRNA (cDNA clone
MGC:35562 IMAGE:5202287), complete cds.
ACCESSION BC027935
VERSION BC027935.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2139)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2139)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: d Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2139
/db_xref="H-InvDB:HIT000040363"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:35562 IMAGE:5202287"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2139
/gene="C19orf47"
/gene_synonym="FLJ36888"
/db_xref="GeneID:126526"
/db_xref="HGNC:HGNC:26723"
CDS 231..1298
/gene="C19orf47"
/gene_synonym="FLJ36888"
/codon_start=1
/product="chromosome 19 open reading frame 47"
/protein_id="AAH27935.1"
/db_xref="GeneID:126526"
/db_xref="HGNC:HGNC:26723"
/translation="MFVDNRIQKSMLLDLNKEIMNELGVTVVGDIIAILKHAKVVHRQ
DMCKAATESVPCSPSPLAGEIRRGTSAASRMITNSLNHDSPPSTPPRRPDTSTSKISV
TVSNKMAAKSAKATAALARREEESLAVPAKRRRVTAEMEGKYVINMPKGTTPRTRKIL
EQQQAAKGLHRTSVFDRLGAETKADTTTGSKPTGVFSRLGATPETDEDLAWDSDNDSS
SSVLQYAGVLKKLGRGPAKASPQPALTVKAKATSSATTAAAPTLRRLALSSRSGLERK
PESLSKVSIIKRLGAAALVPEAQDSQVTSTKSKSSAEVKVTIKRTLVGPRGSSSSEGL
GAQMDHAGTVSVFKRLGRRTF"
BASE COUNT 410 a 703 c 606 g 420 t
ORIGIN
1 cgccgccggg agggagggcg ggcggcgcga gtgggcgcgg gcccggtggg ccaggctcca
61 gggagcagtg tcagggccag ggagacgatg gtctccgtga ctatgggtga gtctgtggcc
121 ttctctccag ggccccctct ccccactgcc ctttttgagc cacttccgag tggatccagt
181 tctttaagga agccggcatt cctccaggac ctgccgtcaa ttatgccgtg atgtttgtgg
241 ataataggat tcagaagagc atgctgctgg atctcaataa ggagataatg aatgagctgg
301 gcgtgaccgt ggtgggtgac atcatcgcca ttctcaagca tgccaaagtg gtgcaccgtc
361 aggacatgtg caaagctgcc actgagtcag taccctgcag ccctagcccc cttgcaggcg
421 aaattcgccg tggcaccagt gctgcctccc gaatgatcac caacagcctg aaccatgact
481 ctccacccag cacacccccc aggcgcccgg acaccagcac ctccaagatc tcggtcactg
541 tgtccaacaa gatggcagca aagagtgcca aggccactgc agccctggcc cgccgggagg
601 aggagagcct ggctgttcct gccaagcggc gccgggtcac tgctgagatg gaggggaagt
661 acgtcatcaa catgcccaaa ggcaccacac cccgcacccg caagatcctg gagcagcagc
721 aggctgcaaa aggtctccat aggacgtctg tgtttgaccg cctcggcgcc gagaccaagg
781 cagacaccac gacagggagt aaacccacag gagtcttcag ccgcctgggg gccaccccag
841 aaacggacga ggatctggct tgggacagcg acaatgacag cagcagctct gtcttgcagt
901 atgccggggt cctgaagaag ctaggacggg gcccagccaa ggccagtccc cagccagcac
961 tgactgtcaa agccaaggcc acaagctcag cgacaacggc tgctgccccg acactgcggc
1021 gcctggcgct ttcctcacgg tctgggcttg agaggaagcc ggagtccttg tctaaagtca
1081 gcatcatcaa gagactgggc gcagctgccc ttgtgcccga ggcccaggac agccaggtca
1141 ccagcaccaa gagtaagtcc tcagccgagg tcaaggtcac cattaagagg actctggtgg
1201 ggccccgggg gagcagctcc agcgagggcc ttggtgccca gatggaccac gcgggcactg
1261 tgagcgtgtt caaaagactg ggccgcagga ccttctagcc cacctgtggg cggggtgcag
1321 gcagcagagc ctgcgggcat ctgccctggc cgccccaggc tcctggcttc atcacgcctc
1381 ccaccagctc ctggatgaca cagcttgtct ccctcgggct ctagagctag gcccgagcat
1441 tcgggggatc accccatttc tcctagcctg ggatggtcgt cgcagctggc ctggcctgct
1501 ccaggactcc ccttctctca tgtcctctgt gctttcttct ctggctgtgg ccttggcaga
1561 acccactttt ctacctctcc caagtgccag ggggcttctt cctctcctac attccccttc
1621 ttcccctgag cagggtctgc tgcctcagac cccagctcat cagcctccct gtccccctca
1681 actaagtggg tgtcacctgg tgggcctccc ttcccccact ccccactgac ctccctcact
1741 cctctgcgcc tccccccact gctgtgactt ctctctctcc ctgtcttcac tttgttcatt
1801 tctcttctgt tttctgtccc cgtggcaagg cccgactgtc cgctgcgtcc tgcccgaccc
1861 tcctgtacct ccggcctccc agcggccccc tcgtcggcgg tggcgtcgag cctgttgaga
1921 ctgttagccg ccctctactc ccaggctgga gggacctctc cagaccctgg gctgcggctg
1981 aggcgcatcc gttttcctgc cctgggcatc tgtctctgaa agtgtatggc gggtggtggg
2041 caaggggcac tgggaaggga ggccagtgcc tagagtgaag acagctgctg ttttaatata
2101 tttttgtgac tttcaaaaaa aaaaaaaaaa aaaaaaaaa
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