LOCUS BC027918 856 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chemokine (C-C motif) ligand 21, mRNA (cDNA clone
MGC:34555 IMAGE:5226781), complete cds.
ACCESSION BC027918
VERSION BC027918.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 856)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 856)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: n Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22165425.
FEATURES Location/Qualifiers
source 1..856
/db_xref="H-InvDB:HIT000040354"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34555 IMAGE:5226781"
/tissue_type="Pancreas, Spleen, adult pooled"
/clone_lib="NIH_MGC_120"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..856
/gene="CCL21"
/gene_synonym="6Ckine"
/gene_synonym="CKb9"
/gene_synonym="ECL"
/gene_synonym="MGC34555"
/gene_synonym="SLC"
/gene_synonym="TCA4"
/db_xref="GeneID:6366"
/db_xref="HGNC:HGNC:10620"
/db_xref="MIM:602737"
CDS 8..412
/gene="CCL21"
/gene_synonym="6Ckine"
/gene_synonym="CKb9"
/gene_synonym="ECL"
/gene_synonym="MGC34555"
/gene_synonym="SLC"
/gene_synonym="TCA4"
/codon_start=1
/product="chemokine (C-C motif) ligand 21"
/protein_id="AAH27918.1"
/db_xref="GeneID:6366"
/db_xref="HGNC:HGNC:10620"
/db_xref="MIM:602737"
/translation="MAQSLALSLLILVLAFGIPRTQGSDGGAQDCCLKYSQRKIPAKV
VRSYRKQEPSLGCSIPAILFLPRKRSQAELCADPKELWVQQLMQHLDKTPSPQKPAQG
CRKDRGASKTGKKGKGSKGCKRTERSQTPKGP"
BASE COUNT 254 a 253 c 211 g 138 t
ORIGIN
1 cacagacatg gctcagtcac tggctctgag cctccttatc ctggttctgg cctttggcat
61 ccccaggacc caaggcagtg atggaggggc tcaggactgt tgcctcaagt acagccaaag
121 gaagattccc gccaaggttg tccgcagcta ccggaagcag gaaccaagct taggctgctc
181 catcccagct atcctgttct tgccccgcaa gcgctctcag gcagagctat gtgcagaccc
241 aaaggagctc tgggtgcagc agctgatgca gcatctggac aagacaccat ccccacagaa
301 accagcccag ggctgcagga aggacagggg ggcctccaag actggcaaga aaggaaaggg
361 ctccaaaggc tgcaagagga ctgagcggtc acagacccct aaagggccat agcccagtga
421 gcagcctgga gccctggaga ccccaccagc ctcaccagcg cttgaagcct gaacccaaga
481 tgcaagaagg aggctatgct caggggccct ggagcagcca ccccatgctg gccttgccac
541 actctttctc ctgctttaac caccccatct gcattcccag ctctaccctg catggctgag
601 ctgcccacag caggccaggt ccagagagac cgaggaggga gagtctccca gggagcatga
661 gaggaggcag caggactgtc cccttgaagg agaatcatca ggaccctgga cctgatacgg
721 ctccccagta caccccacct cttccttgta aatatgattt atacctaact gaataaaaag
781 ctgttctgtc ttcccaccca aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
841 aaaaaaaaaa aaaaaa
//