LOCUS BC027910 2486 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens Usher syndrome 1C binding protein 1, mRNA (cDNA clone
MGC:34110 IMAGE:5207170), complete cds.
ACCESSION BC027910
VERSION BC027910.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2486)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2486)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: h Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31543139.
FEATURES Location/Qualifiers
source 1..2486
/db_xref="H-InvDB:HIT000040347"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34110 IMAGE:5207170"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2486
/gene="USHBP1"
/gene_synonym="AIEBP"
/gene_synonym="FLJ38709"
/gene_synonym="MCC2"
/db_xref="GeneID:83878"
/db_xref="HGNC:HGNC:24058"
CDS 114..2225
/gene="USHBP1"
/gene_synonym="AIEBP"
/gene_synonym="FLJ38709"
/gene_synonym="MCC2"
/codon_start=1
/product="Usher syndrome 1C binding protein 1"
/protein_id="AAH27910.1"
/db_xref="GeneID:83878"
/db_xref="HGNC:HGNC:24058"
/translation="MSARATRPRSRRGRHAPPGELDPVAESSEEVEAASGSSKPSFAP
PPVSSGLEQLGPMEEVSGQGLGSRTDKKMDGGSGRELASAPEVPHKPAVEAHQAPEAA
LQYKETVPPGNGAPDVFQTLQHTLSSLEAAAAAWRHQPPSHSGPMEFEGTSEGGAGSL
GKQEGAGSCQREAARLAERNAWLRLALSSREDELVRTQASLEAIRAEKETLQKEVQEL
QDSLLRLEPCPHLSHNQAGGSGSGSSSSEADREPWETQDSFSLAHPLLRRLRSHSSTQ
ILGSLPNQPLSPEMHIMEAQMEQLRGSIEKLKCFNRLLSAVLQGYKGRCEGLSMQLGQ
REAEATALHLALQYSEHCEEAYRVLLALREADSGAGDEAPMSDLQAAEKEAWRLLAQE
EAAMDAGAQQNPQPSPEGSSVDKPTPQEVAFQLRSYVQRLQERRSLMKILSEPGPTLA
PMPTVPRAEAMVQAILGTQAGPALPRLEKTQIQQDLVAAREALADLMLRLQLVRREKR
GLELREAALRALGPAHVLLLEQLRWERAELQAGGANSSGGHSSGGGSSGDEEEWYQGL
PAVPGGTSGIDGGQVGRAWDPEKLAQELAASLTRTLDLQEQLQSLRRELEQVAQKGRA
RRSQSAELNRDLCKAHSALVLAFRGAHRKQEEQRRKLEQQMALMEAQQAEEVAVLEAT
ARALGKPRPPLPPPQLGDTFL"
BASE COUNT 597 a 703 c 804 g 382 t
ORIGIN
1 gtgaccccaa cagagtgtcc cgggactcag gcctctgatc aagttacccc cagaggatca
61 gagaggggtt gacgaaggag aagcattcag agggcactgg cttctggaca gcaatgagtg
121 cccgggccac gcggccccga agccggcgag ggaggcatgc tccacccggt gaactggatc
181 ccgtggctga gagttcagag gaggtcgagg cagccagtgg gagctccaag cccagctttg
241 ccccacctcc ggtgagctcc gggctggagc agctgggccc catggaggag gtcagtggcc
301 aaggcctagg aagcaggact gacaagaaga tggatggggg ctctggcagg gaactggcct
361 cagcccccga agtgccccac aaacctgcag tggaagccca ccaagcccca gaagcagccc
421 tacagtacaa ggagactgtg ccccctggga atggggcccc cgatgtgttt cagaccctcc
481 agcacactct gagctccctg gaggcagcgg ctgcagcctg gcgccaccag ccccccagcc
541 attctgggcc gatggagttc gaaggcacaa gcgaaggggg agcaggttcc cttgggaagc
601 aggaaggggc agggagctgc cagcgagagg cagctcgcct ggccgagagg aatgcctggc
661 tccggctggc cctgagtagc cgagaggatg agctggtccg cacgcaggcc tccctggagg
721 ccatccgagc tgagaaggag acgctgcaga aagaggttca agagctgcag gattccctct
781 tgaggctgga gccctgccca catctttccc acaaccaagc aggtggctca ggcagtggtt
841 ctagcagctc tgaggcagac agggaaccct gggagactca ggactccttc tccctggctc
901 accccctgct tcggcgcctc cgcagccatt ccagcaccca gatccttggg tctcttccca
961 accagcccct cagtcctgag atgcacatca tggaagccca gatggagcaa ctccggggga
1021 gcattgagaa gctcaaatgc tttaatcgtc tgctatcagc tgtgctacag ggatacaagg
1081 gccgctgtga aggcctcagc atgcagctag gccagcggga ggctgaggcc acagcattgc
1141 atctggcctt gcagtacagt gaacactgtg aagaggcata cagggttctg cttgctctgc
1201 gggaggccga ctcaggagca ggagacgaag cccccatgag tgacctgcaa gcagctgaaa
1261 aggaagcatg gaggctgctg gcacaagagg aggctgccat ggatgcagga gcacagcaga
1321 atccacagcc aagccctgaa ggcagcagtg tggataagcc caccccacag gaagtggctt
1381 tccagctccg aagctatgtc cagcgtctcc aggagcgccg ttctctaatg aagattctct
1441 cagagcctgg ccccaccttg gcacccatgc ccactgtgcc ccgtgcagaa gccatggtgc
1501 aggccattct ggggacccag gctggcccag ctcttccccg actggagaag acacaaattc
1561 agcaggacct ggtggccgca agggaggccc tggcggacct gatgcttcgg ctgcagctgg
1621 tgcggcgtga gaagcggggc ctagagctgc gggaggctgc cctccgagcc ctgggtccag
1681 ctcacgtgct cctgctggag cagctgcggt gggaacgggc ggagctccag gctggtgggg
1741 caaacagcag tggcggacat agcagcggag gtggcagcag cggggacgag gaagagtggt
1801 atcagggcct tcctgctgtc cctggtggca ccagtggcat tgatggtggc caggtgggca
1861 gagcctggga cccagagaag ttagcccagg aactggcagc atcgctcacc aggacactgg
1921 acctgcagga gcagctgcag tctctgcgca gggagctgga acaggtggct cagaaggggc
1981 gagccagacg gtctcagagt gccgagctga acagggattt atgcaaagcc cacagcgccc
2041 tggtcctggc cttccgagga gcccaccgga agcaggaaga gcaacgccgg aagttggagc
2101 agcagatggc actcatggag gctcagcagg ccgaggaggt ggcggtgctc gaagccactg
2161 caagggccct ggggaagccc aggcctcccc tcccgcctcc ccagcttggg gacacctttc
2221 tgtaggcccc ttacccagcc atgtctggac atgccagaca gctgtggcat gtcataaact
2281 gtcctggagt gacatcatgt catgttgcat gatttggcat gttggggcac atttggcgtg
2341 agggaagctg gtgcacatgg gtgtccaggg cctgatgggg cgtggccagg caataaagaa
2401 agactcaggt aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2461 aaaaaaaaaa aaaaaaaaaa aaaaaa
//