LOCUS BC027881 2098 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens alpha-fetoprotein, mRNA (cDNA clone MGC:34639
IMAGE:5208299), complete cds.
ACCESSION BC027881
VERSION BC027881.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2098)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2098)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: i Column: 12.
FEATURES Location/Qualifiers
source 1..2098
/db_xref="H-InvDB:HIT000040332"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34639 IMAGE:5208299"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2098
/gene="AFP"
/gene_synonym="FETA"
/db_xref="GeneID:174"
/db_xref="HGNC:HGNC:317"
/db_xref="MIM:104150"
CDS 31..1860
/gene="AFP"
/gene_synonym="FETA"
/codon_start=1
/product="alpha-fetoprotein"
/protein_id="AAH27881.1"
/db_xref="GeneID:174"
/db_xref="HGNC:HGNC:317"
/db_xref="MIM:104150"
/translation="MKWVESIFLIFLLNFTESRTLHRNEYGIASILDSYQCTAEISLA
DLATIFFAQFVQEATYKEVSKMVKDALTAIEKPTGDEQSSGCLENQLPAFLEELCHEK
EILEKYGHSDCCSQSEEGRHNCFLAHKKPTPASIPLFQVPEPVTSCEAYEEDRETFMN
KFIYEIARRHPFLYAPTILLWAARYDKIIPSCCKAENAVECFQTKAATVTKELRESSL
LNQHACAVMKNFGTRTFQAITVTKLSQKFTKVNFTEIQKLVLDVAHVHEHCCRGDVLD
CLQDGEKIMSYICSQQDTLSNKITECCKLTTLERGQCIIHAENDEKPEGLSPNLNRFL
GDRDFNQFSSGEKNIFLASFVHEYSRRHPQLAVSVILRVAKGYQELLEKCFQTENPLE
CQDKGEEELQKYIQESQALAKRSCGLFQKLGEYYLQNAFLVAYTKKAPQLTSSELMAI
TRKMAATAATCCQLSEDKLLACGEGAADIIIGHLCIRHEMTPVNPGVGQCCTSSYANR
RPCFSSLVVDETYVPPAFSDDKFIFHKDLCQAQGVALQTMKQEFLINLVKQKPQITEE
QLEAVIADFSGLLEKCCQGQEQEVCFAEEGQKLISKTRAALGV"
BASE COUNT 745 a 403 c 423 g 527 t
ORIGIN
1 ccactgccaa taacaaaata actagcaacc atgaagtggg tggaatcaat ttttttaatt
61 ttcctactaa attttactga atccagaaca ctgcatagaa atgaatatgg aatagcttcc
121 atattggatt cttaccaatg tactgcagag ataagtttag ctgacctggc taccatattt
181 tttgcccagt ttgttcaaga agccacttac aaggaagtaa gcaaaatggt gaaagatgca
241 ttgactgcaa ttgagaaacc cactggagat gaacagtctt cagggtgttt agaaaaccag
301 ctacctgcct ttctggaaga actttgccat gagaaagaaa ttttggagaa gtacggacat
361 tcagactgct gcagccaaag tgaagaggga agacataact gttttcttgc acacaaaaag
421 cccactccag catcgatccc acttttccaa gttccagaac ctgtcacaag ctgtgaagca
481 tatgaagaag acagggagac attcatgaac aaattcattt atgagatagc aagaaggcat
541 cccttcctgt atgcacctac aattcttctt tgggctgctc gctatgacaa aataattcca
601 tcttgctgca aagctgaaaa tgcagttgaa tgcttccaaa caaaggcagc aacagttaca
661 aaagaattaa gagaaagcag cttgttaaat caacatgcat gtgcagtaat gaaaaatttt
721 gggacccgaa ctttccaagc cataactgtt actaaactga gtcagaagtt taccaaagtt
781 aattttactg aaatccagaa actagtcctg gatgtggccc atgtacatga gcactgttgc
841 agaggagatg tgctggattg tctgcaggat ggggaaaaaa tcatgtccta catatgttct
901 caacaagaca ctctgtcaaa caaaataaca gaatgctgca aactgaccac gctggaacgt
961 ggtcaatgta taattcatgc agaaaatgat gaaaaacctg aaggtctatc tccaaatcta
1021 aacaggtttt taggagatag agattttaac caattttctt caggggaaaa aaatatcttc
1081 ttggcaagtt ttgttcatga atattcaaga agacatcctc agcttgctgt ctcagtaatt
1141 ctaagagttg ctaaaggata ccaggagtta ttggagaagt gtttccagac tgaaaaccct
1201 cttgaatgcc aagataaagg agaagaagaa ttacagaaat acatccagga gagccaagca
1261 ttggcaaagc gaagctgcgg cctcttccag aaactaggag aatattactt acaaaatgcg
1321 tttctcgttg cttacacaaa gaaagccccc cagctgacct cgtcggagct gatggccatc
1381 accagaaaaa tggcagccac agcagccact tgttgccaac tcagtgagga caaactattg
1441 gcctgtggcg agggagcggc tgacattatt atcggacact tatgtatcag acatgaaatg
1501 actccagtaa accctggtgt tggccagtgc tgcacttctt catatgccaa caggaggcca
1561 tgcttcagca gcttggtggt ggatgaaaca tatgtccctc ctgcattctc tgatgacaag
1621 ttcattttcc ataaggatct gtgccaagct cagggtgtag cgctgcaaac gatgaagcaa
1681 gagtttctca ttaaccttgt gaagcaaaag ccacaaataa cagaggaaca acttgaggct
1741 gtcattgcag atttctcagg cctgttggag aaatgctgcc aaggccagga acaggaagtc
1801 tgctttgctg aagagggaca aaaactgatt tcaaaaactc gtgctgcttt gggagtttaa
1861 attacttcag gggaagagaa gacaaaacga gtctttcatt cggtgtgaac ttttctcttt
1921 aattttaact gatttaacac tttttgtgaa ttaatgaaat gataaagact tttatgtgag
1981 atttccttat cacagaaata aaatatctcc aaatgttaaa aaaaaaaaaa aaaaaaaaaa
2041 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//