LOCUS BC027711 4234 bp mRNA linear HUM 11-DEC-2003 DEFINITION Homo sapiens protein tyrosine phosphatase, non-receptor type 23, mRNA (cDNA clone IMAGE:4111514), partial cds. ACCESSION BC027711 VERSION BC027711.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4234) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4234) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Dec 9, 2003 this sequence version replaced BC027711.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 20 Row: c Column: 17. FEATURES Location/Qualifiers source 1..4234 /db_xref="H-InvDB:HIT000091369" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4111514" /tissue_type="Muscle, rhabdomyosarcoma" /clone_lib="NIH_MGC_17" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..4234 /gene="PTPN23" /gene_synonym="DKFZP564F0923" /gene_synonym="HD-PTP" /gene_synonym="HDPTP" /gene_synonym="KIAA1471" /db_xref="GeneID:25930" /db_xref="MIM:606584" CDS <1..3965 /gene="PTPN23" /gene_synonym="DKFZP564F0923" /gene_synonym="HD-PTP" /gene_synonym="HDPTP" /gene_synonym="KIAA1471" /codon_start=3 /product="PTPN23 protein" /protein_id="AAH27711.2" /db_xref="GeneID:25930" /db_xref="MIM:606584" /translation="DFIYHEAVPALDTLQPVKGAPLVKPLPVNPTDPAVTGPDIFAKL VPMAAHEASSLYSEEKAKLLREMMAKIEDKNEVLDQFMDSMQLDPETVDNLDAYSHIP PQLMEKCAALSVRPDTVRNLVQSMQVLSGVFTDVEASLKDIRDLLEEDELLEQKFQEA VGQAGAISITSKAELAEVRREWAKYMEVHEKASFTNSELHRAMNLHVGNLRLLSGPLD QVRAALPTPALSPEDKAVLQNLKRILAKVQEMRDQRVSLEQQLRELIQKDDITASLVT TDHSEMKKLFEEQLKKYDQLKVYLEQNLAAQDRVLCALTEANVQYAAVRRVLSDLDQK WNSTLQTLVASYEAYEDLMKKSQEGRDFYADLESKVAALLERTQSTCQAREAARQQLL DRELKKKPPPRPTAPKPLLPRREESEAVEAGDPPEELRSLPPDMVAGPRLPDTFLGSA TPLHFPPSPFPSSTGPGPHYLSGPLPPGTYSGPTQLIQPRAPGPHAMPVAPGPALYPA PAYTPELGLVPRSSPQHGVVSSPYVGVGPAPPVAGLPSAPPPQFSGPELAMAVRPATT TVDSIQAPIPSHTAPRPNPTPAPPPPCFPVPPPQPLPTPYTYPAGAKQPIPAQHHFSS GIPAGFPAPRIGPQPQPHPQPHPSQAFGPQPPQQPLPLQHPHLFPPQAPGLLPPQSPY PYAPQPGVLGQPPPPLHTQLYPGPAQDPLPAHSGALPFPSPGPPQPPHPPLAYGPAPS TRPMGPQAAPLTIRGPSSAGQSTPSPHLVPSPAPSPGPGPVPPRPPAAEPPPCLRRGA AAADLLSSSPESQHGGTQSPGGGQPLLQPTKVDAAEGRRPQALRLIERDPYEHPERLR QLQQELEAFRGQLGDVGALDTVWRELQDAQEHDARGRSIAIARCYSLKNRHQDVMPYD SNRVVLRSGKDDYINASCVEGLSPYCPPLVATQAPLPGTAADFWLMVHEQKVSVIVML VSEAEMEKQKVARYFPTERGQPMVHGALSLALSSVRSTETHVERVLSLQFRDQSLKRS LVHLHFPTWPELGLPDSPSNLLRFIQEVHAHYLHQRPLHTPIIVHCSSGVGRTGAFAL LYAAVQEVEAGNGIPELPQLVRRMRQQRKHMLQEKLHLRFCYEAVVRHVEQVLQRHGV PPPCKPLASASISQKNHLPQDSQDLVLGGDVPISSIQATIAKLSIRPPGGLESPVASL PGPAEPPGLPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPVPEAPSSGPPSSSLE LLASLTPEAFSLDSSLRGKQRMSKHNFLQAHNGQGLRATRPSDDPLSLLDPLWTLNKT " misc_feature 2625..3416 /gene="PTPN23" /gene_synonym="DKFZP564F0923" /gene_synonym="HD-PTP" /gene_synonym="HDPTP" /gene_synonym="KIAA1471" /note="PTPc; Region: Protein tyrosine phosphatase, catalytic domain" /db_xref="CDD:smart00194" BASE COUNT 832 a 1522 c 1131 g 749 t ORIGIN 1 acgacttcat ttaccatgag gctgtcccag cattggacac ccttcagcct gtaaaaggag 61 cccccttggt gaagcccttg ccagtgaacc ccacagaccc agctgttaca ggccctgaca 121 tctttgccaa actggtaccc atggctgccc acgaggcctc gtcactgtac agtgaggaga 181 aggccaagct gctccgggag atgatggcca agattgagga caagaatgag gtcctggacc 241 agttcatgga ttcaatgcag ttggatcccg agacggtgga caaccttgat gcctacagcc 301 acatcccacc ccagctcatg gagaagtgcg cggctctcag cgtccggccc gacactgtca 361 ggaaccttgt acagtccatg caagtgctgt caggtgtgtt cacggatgtg gaggcttccc 421 tgaaggacat cagagatctg ttggaggagg atgagctgct agagcagaag tttcaggagg 481 cggtgggcca ggcaggggcc atctccatca cctccaaggc tgagctggca gaggtgaggc 541 gagaatgggc caagtacatg gaagtccatg agaaggcctc cttcaccaac agtgagctgc 601 accgtgccat gaacctgcac gtcggcaacc tgcgcctgct cagcgggccg cttgaccagg 661 tccgggctgc cctgcccaca ccggccctct ccccagagga caaggccgtg ctgcaaaacc 721 taaagcgcat cctggctaag gtgcaggaga tgcgggacca gcgcgtgtcc ctggagcagc 781 agctgcgtga gcttatccag aaagatgaca tcactgcctc gctggtcacc acagaccact 841 cagagatgaa gaagttgttc gaggagcagc tgaaaaagta tgaccagctg aaggtgtacc 901 tggagcagaa cctggccgcc caggaccgtg tcctctgtgc actgacagag gccaacgtgc 961 agtacgcagc cgtgcggcgg gtactcagcg acttggacca aaagtggaac tccacgctgc 1021 agaccctggt ggcctcgtat gaagcctatg aggacctgat gaagaagtcg caggagggca 1081 gggacttcta cgcagatctg gagagcaagg tggctgctct gctggagcgc acgcagtcca 1141 cctgccaggc ccgcgaggct gcccgccagc agctcctgga cagggagctg aagaagaagc 1201 cgccgccacg gcccacagcc ccaaagccgc tgctgccccg cagggaggag agtgaggcag 1261 tggaagcagg agacccccct gaggagctgc gcagcctccc ccctgacatg gtggctggcc 1321 cacgactgcc tgacaccttc ctgggaagtg ccaccccgct ccactttcct cccagcccct 1381 tccccagctc cacaggccca ggaccccact atctctcagg ccccttgccc cctggtacct 1441 actcgggccc cacccagctg atacagccca gggccccagg gccccatgca atgcccgtag 1501 cacctgggcc tgccctctac ccagcccctg cctacacacc ggagctgggc cttgtgcccc 1561 gatcctcccc acagcatggc gtggtgagca gtccctatgt gggggtaggg ccggccccac 1621 cagttgcagg tctcccctcg gccccacctc ctcaattctc aggccccgag ttggccatgg 1681 cggttcggcc agccaccacc acagtagata gcatccaggc gcccatcccc agccacacag 1741 ccccacggcc aaaccccacc cctgctcctc ccccgccctg cttccctgtg cccccaccgc 1801 agccactgcc cacgccttac acctaccctg caggggctaa gcaacccatc ccagcacagc 1861 accacttctc ttctgggatc cccgcaggtt ttccagcccc aaggattggg ccccagcccc 1921 agccccatcc tcagccccat ccttcacaag cgtttgggcc tcagccccca cagcagcccc 1981 ttccactcca gcatccacat ctcttcccac cccaggcccc aggactccta cccccacaat 2041 ccccctaccc ctatgcccct cagcctgggg tcctggggca gccgccaccc cccctacaca 2101 cccagctcta cccaggtccc gctcaagacc ctctgccagc ccactcaggg gctctgcctt 2161 tccccagccc tgggccccct cagcctcccc atcccccact ggcatatggt cctgcccctt 2221 ctaccagacc catgggcccc caggcagccc ctcttaccat tcgagggccc tcgtctgctg 2281 gccagtccac ccctagtccc cacctggtgc cttcacctgc cccatctcca gggcctggtc 2341 cggtaccccc tcgcccccca gcagcagaac cacccccttg cctgcgccga ggcgccgcag 2401 ctgcagacct gctctcctcc agcccggaga gccagcatgg cggcactcag tctcctgggg 2461 gtgggcagcc cctgctgcag cccaccaagg tggatgcagc tgagggtcgt cggccgcagg 2521 ccctgcggct gattgagcgg gacccctatg aacatcctga gaggctgcgg cagttgcagc 2581 aggagctgga ggcctttcgg ggtcagctgg gggatgtggg agctctggac actgtctggc 2641 gagagctgca agatgcgcag gaacatgatg cccgaggccg ttccatcgcc attgcccgct 2701 gctactcact gaagaaccgg caccaggatg tcatgcccta tgacagtaac cgtgtggtgc 2761 tgcgctcagg caaggatgac tacatcaatg ccagctgcgt ggaggggctc tccccatact 2821 gccccccgct agtggcaacc caggccccac tgcctggcac agctgctgac ttctggctca 2881 tggtccatga gcagaaagtg tcagtcattg tcatgctggt ttctgaggct gagatggaga 2941 agcaaaaagt ggcacgctac ttccccaccg agaggggcca gcccatggtg cacggtgccc 3001 tgagcctggc attgagcagc gtccgcagca ccgaaaccca tgtggagcgc gtgctgagcc 3061 tgcagttccg agaccagagc ctcaagcgct ctcttgtgca cctgcacttc cccacttggc 3121 ctgagttagg cctgcccgac agccccagca acttgctgcg cttcatccag gaggtgcacg 3181 cacattacct gcatcagcgg ccgctgcaca cgcccatcat tgtgcactgc agctctggtg 3241 tgggccgcac gggagccttt gcactgctct atgcagctgt gcaggaggtg gaggctggga 3301 acggaatccc tgagctgcct cagctggtgc ggcgcatgcg gcagcagaga aagcacatgc 3361 tgcaggagaa gctgcacctc aggttctgct atgaggcagt ggtgagacac gtggagcagg 3421 tcctgcagcg ccatggtgtg cctcctccat gcaaaccctt ggccagtgca agcatcagcc 3481 agaagaacca ccttcctcag gactcccagg acctggtcct cggtggggat gtgcccatca 3541 gctccatcca ggccaccatt gccaagctca gcattcggcc tcctgggggg ttggagtccc 3601 cggttgccag cttgccaggc cctgcagagc ccccaggcct cccgccagcc agcctcccag 3661 agtctacccc aatcccatct tcctccccac cccccctttc ctccccacta cctgaggctc 3721 cccagcctaa ggaggagccg ccagtgcctg aagcccccag ctcggggccc ccctcctcct 3781 ccctggaatt gctggcctcc ttgaccccag aggccttctc cctggacagc tccctgcggg 3841 gcaaacagcg gatgagcaag cataactttc tgcaggccca taacgggcaa gggctgcggg 3901 ccacccggcc ctctgacgac cccctcagcc ttctggatcc actctggaca ctcaacaaga 3961 cctgaacagg ttttgcctac ctggtcctta cactacatca tcatcatctc atgcccacct 4021 gcccacaccc agcagagctt ctcagtgggc acagtctctt actcccattt ctgctgcctt 4081 tggccctgcc tggcccagcc tgcacccctg tggggtggaa atgtactgca ggctctgggt 4141 caggttctgc tcctttatgg gacccgacat ttttcagctc tttgctattg aaataataaa 4201 ccaccctgtt ctgtgaaaaa aaaaaaaaaa aaaa //