LOCUS BC027708 1659 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens splicing factor proline/glutamine-rich (polypyrimidine
tract binding protein associated), mRNA (cDNA clone IMAGE:3960188),
partial cds.
ACCESSION BC027708
VERSION BC027708.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1659)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1659)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC027708.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 15 Row: b Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4826997.
FEATURES Location/Qualifiers
source 1..1659
/db_xref="H-InvDB:HIT000091368"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3960188"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>1659
/gene="SFPQ"
/gene_synonym="POMP100"
/gene_synonym="PSF"
/db_xref="GeneID:6421"
/db_xref="MIM:605199"
CDS 85..>1659
/gene="SFPQ"
/gene_synonym="POMP100"
/gene_synonym="PSF"
/codon_start=1
/product="SFPQ protein"
/protein_id="AAH27708.1"
/db_xref="GeneID:6421"
/db_xref="MIM:605199"
/translation="MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNR
GPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPP
PQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSA
PPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKP
GGGPGLSTPGGHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSE
GFKANLSLLRRPGEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGF
GFIKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFS
QFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPL
EQLDDEDGLPEKLAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQV
EKNMKDAKDKLKKKKKK"
BASE COUNT 386 a 524 c 457 g 292 t
ORIGIN
1 cgccattttg tgagaagcaa ggtggcctcc acgtttcctg agcgtcttct tcgcttttgc
61 ctcgaccgcc ccttgaccac agacatgtct cgggatcggt tccggagtcg tggcggtggc
121 ggtggtggct tccacaggcg tggaggaggc ggcggccgcg gcggcctcca cgacttccgt
181 tctccgccgc ccggcatggg cctcaatcag aatcgcggcc ccatgggtcc tggcccgggc
241 cagagcggcc ctaagcctcc gatcccgcca ccgcctccac accaacagca gcaacagcca
301 ccaccgcagc agccaccgcc gcagcagccg ccaccgcatc agccgccgcc gcatccacag
361 ccgcatcagc agcagcagcc gccgccaccg ccgcaggact cttccaagcc cgtcgttgct
421 cagggacccg gccccgctcc cggagtaggc agcgcaccac cagcctccag ctcggccccg
481 cccgccactc caccaacctc gggggccccg ccagggtccg ggccaggccc gactccgacc
541 ccgccgcctg cagtcacctc ggcccctccc ggggcgccgc cacccacccc gccaagcagc
601 ggggtcccta ccacacctcc tcaggccgga ggcccgccgc ctccgcccgc ggcagtcccg
661 ggcccgggtc cagggcctaa gcagggccca ggtccgggtg gtcccaaagg cggcaaaatg
721 cctggcgggc cgaagccagg tggcggcccg ggcctaagta cgcctggcgg ccaccccaag
781 ccgccgcatc gaggcggcgg ggagccccgc gggggccgcc agcaccaccc gccctaccac
841 cagcagcatc accaggggcc cccgcccggc gggcccggcg gccgcagcga ggagaagatc
901 tcggactcgg aggggtttaa agccaatttg tctctcttga ggaggcctgg agagaaaact
961 tacacacagc gatgtcggtt gtttgttggg aatctacctg ctgatatcac ggaggatgaa
1021 ttcaaaagac tatttgctaa atatggagaa ccaggagaag tttttatcaa caaaggcaaa
1081 ggattcggat ttattaagct tgaatctaga gctttggctg aaattgccaa agccgaactg
1141 gatgatacac ccatgagagg tagacagctt cgagttcgct ttgccacaca tgctgctgcc
1201 ctttctgttc gtaatctttc accttatgtt tccaatgaac tgttggaaga agcctttagc
1261 caatttggtc ctattgaaag ggctgttgta atagtggatg atcgtggaag atctacaggg
1321 aaaggcattg ttgaatttgc ttctaagcca gcagcaagaa aggcatttga acgatgcagt
1381 gaaggtgttt tcttactgac gacaactcct cgtccagtca ttgtggaacc acttgaacaa
1441 ctagatgatg aagatggtct tcctgaaaaa cttgcccaga agaatccaat gtatcaaaag
1501 gagagagaaa cccctcctcg ttttgcccag catggcacgt ttgagtacga atattctcag
1561 cgatggaagt ctttggatga aatggaaaaa cagcaaaggg aacaagttga aaaaaacatg
1621 aaagatgcaa aagacaaatt aaaaaaaaaa aaaaaaaaa
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