LOCUS BC027622 2161 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens pipecolic acid oxidase, mRNA (cDNA clone MGC:33460
IMAGE:4797450), complete cds.
ACCESSION BC027622
VERSION BC027622.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2161)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2161)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC027622.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: b Column: 22.
FEATURES Location/Qualifiers
source 1..2161
/db_xref="H-InvDB:HIT000040296"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33460 IMAGE:4797450"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2161
/gene="PIPOX"
/gene_synonym="LPIPOX"
/db_xref="GeneID:51268"
/db_xref="HGNC:HGNC:17804"
CDS 63..1235
/gene="PIPOX"
/gene_synonym="LPIPOX"
/codon_start=1
/product="pipecolic acid oxidase"
/protein_id="AAH27622.1"
/db_xref="GeneID:51268"
/db_xref="HGNC:HGNC:17804"
/translation="MAAQKDLWDAIVIGAGIQGCFTAYHLAKHRKRILLLEQFFLPHS
RGSSHGQSRIIRKAYLEDFYTRMMHECYQIWAQLEHEAGTQLHRQTGLLLLGMKENQE
LKTIQANLSRQRVEHQCLSSEELKQRFQNIRLPRGEVGLLDNSGGVIYAYKALRALQD
AIRQLGGVVRDGEKVVEINPGLLVTVKTTSRSYQAKSLVITAGPWTNQLLRPLGIEMP
LQTLRINVCYWREMVPGSYGVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVSYHHGN
HADPEERDCHTARTDIGDVQILSSFVRDHLPDLKPEPAVIESCMYTNTPDEQFILDRH
PKYDNIVIGAGFSGHGFKLAPVVGKILYELSMKLTPSYDLAPFRISRFPGLGKAHL"
BASE COUNT 561 a 550 c 559 g 491 t
ORIGIN
1 gggagcctgt ctttgcttgc ctttgccttt gaggctctgt ggctgtgggg ctgagtggca
61 tcatggcggc tcagaaagat ctctgggacg ccattgtgat tggggcgggg atccagggct
121 gcttcactgc ataccacctg gccaaacaca ggaagaggat cctcctgctg gagcagttct
181 ttctaccaca ctcccgagga agctcccatg gacaaagccg gataatccga aaggcgtacc
241 tggaagactt ttacacccgg atgatgcatg agtgctatca gatatgggcc cagctggagc
301 acgaggctgg aacccaattg cacaggcaga ctggattact gctgctggga atgaaagaga
361 atcaagaatt aaagacaatc caggccaatc tgtcgaggca gagggtagaa caccagtgtc
421 tttcatctga ggaactgaag caacgtttcc aaaatattcg gttgcccagg ggagaagtgg
481 ggctcttgga caattccgga ggagttatct atgcatataa ggccctcaga gccctgcagg
541 atgcaattcg acagctagga ggcgtagtgc gtgacggaga gaaggtggtg gagataaacc
601 cagggctact ggtcacggtg aaaaccacct ccaggagcta ccaagctaag agcttggtca
661 tcacagcagg tccttggacc aaccagctcc tccgtcccct gggcattgag atgcctctcc
721 agaccctgcg gatcaacgtg tgttactggc gagagatggt tcctgggagc tatggtgtgt
781 cacaggcctt tccgtgcttc ctgtggctgg gcttgtgtcc ccaccacatc tacggactgc
841 ccacaggaga gtacccaggg ctgatgaagg tcagctatca ccacggcaac cacgcagacc
901 ctgaggagcg ggactgccac acagcacgca cagacatcgg agacgtccag atcctgagca
961 gctttgtcag agatcactta cctgatctga agcccgagcc tgctgtcatt gagagctgca
1021 tgtacacgaa tacccctgat gagcagttca ttctcgatcg ccacccaaag tatgacaaca
1081 ttgtcattgg tgctggattc tctgggcacg ggttcaagct ggcccctgtg gtggggaaga
1141 tcctgtatga attaagcatg aaattaacac catcttatga cttggcacct tttcgaatca
1201 gccgtttccc aggcctgggc aaagcccacc tttgacctct ggccagaagc ctcccttctg
1261 tgcacaggag ccagtttcac agatggagaa gatgtctcag atgaagggag tgtccctgag
1321 atatcatcct tttcttctgc ctcgcctgaa tcccccataa acaccagatg attgagtgta
1381 ccttctttcc ttggcccgct ccctttttct tctgcctcac ttgaatcccc cgtaaacacc
1441 agacgattga gtctaccttc ttttcttggc cacctcccca ttcacaacta ctttctcgct
1501 cccagaaggt tgatcagata ttctacaatc acagagtagc aaggacgttt gagatgggta
1561 tatcagtaag aagagggcac aagaactggc tctggagacc aaagcagttg ttaaaaattc
1621 tctttgctgg gggccgggtg tggtggctca cacctgtaat ctcggcactt tggggggctg
1681 agacaggcgg atcacctgag gccaggaatt caagaccagc ctggccaaca tggtgaaacc
1741 ctatctccac taaaaataca aaattagctg ggtgtggtgg cgcatgcctg taatcccagc
1801 tacttgggag actgaggcaa gagaatcact tgaacccggg aggtggaggt ggcagtgagc
1861 cgagattgcg ccattgcact ccagctgggc aaaaagagtg agactctgtc tcaaaaaaaa
1921 aacaaaacaa aaaaaacctc tttgctggta tatttgaaga gcttgggatg gatttgacta
1981 aatctgcccc gaggagggtg aacaaggtga tctcagagat cactactgct cttggagttc
2041 cttctcctaa agctaaggcc agcctccatc acaaatgccc ataaaatctg gctcgtcttt
2101 gatgaacaat aaatatttgt tgaacaaata aataactgcc ctgccaaaaa aaaaaaaaaa
2161 a
//