LOCUS BC027602 2760 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens transmembrane channel-like 5, mRNA (cDNA clone
MGC:26648 IMAGE:4839111), complete cds.
ACCESSION BC027602
VERSION BC027602.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2760)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2760)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 34 Row: p Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33942079.
FEATURES Location/Qualifiers
source 1..2760
/db_xref="H-InvDB:HIT000040282"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26648 IMAGE:4839111"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2760
/gene="TMC5"
/gene_synonym="FLJ13593"
/db_xref="GeneID:79838"
/db_xref="HGNC:HGNC:22999"
CDS 213..2495
/gene="TMC5"
/gene_synonym="FLJ13593"
/codon_start=1
/product="transmembrane channel-like 5"
/protein_id="AAH27602.1"
/db_xref="GeneID:79838"
/db_xref="HGNC:HGNC:22999"
/translation="MLSDDHVNEIIIQVENVSSGVQSHPSSNQIFQEKVLLDSSINMV
LSISDIDVIDSQTVSKRNDQKGNQVLRFSTSLNESMSQTLHSLECMGIDTPGSSHETV
QGQKLIASLIPMTSRDRIKAIRNQPRTMEEKRNLRKIVDKEKSKQTHRILQLNCCIQC
LNSISRAYRRSKNSLSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSF
ILNFSFIIIPQFTVAKKNTLQFTGLEFFTGVGYFRDTVMYYGFYTNSTIQHGNSGASY
NMQLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHIYSGGITKLIFCWDFTVTHEK
AVKLKQKNLSTEIRENLSELRQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAAVY
YLAEYNLEFLKTHSNPGAVLLLPFVVSCINLAVPCIYSMFRLVERYEMPRHEVYVLLI
RNIFLKISIIGILCYYWLNTVALSGEECWETLIGQDIYRLLLMDFVFSLVNSFLGEFL
RRIIGMQLITSLGLQEFDIARNVLELIYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSK
NISLMMNFQPPSKAWRASQMMTFFIFLLFFPSFTGVLCTLAITIWRLKPSADCGPFRG
LPLFIHSIYSWIDTLSTRPGYLWVVWIYRNLIGSVHFFFILTLIVLIITYLYWQITEG
RKIMIRLLHEQIINEGKDKMFLIEKLIKLQDMEKKANPSSLVLERREVEQQGFLHLGE
HDGSLDLRSRRSVQEGNPRA"
BASE COUNT 739 a 637 c 625 g 759 t
ORIGIN
1 agcggggtta gatgcaggga gttatgttgt gatttgtgta ggggtggctt tggtgagctc
61 atcctggcat tttaaaaata atgtgaatgg tgtatccctt tgtgatcatc atcacttttt
121 ccctgcgagt cccaatcaat gcgggtgtga ctgctgtatg aagtctcagg aagcccaccc
181 cagtggagaa gaaggcttgc aggaggcagg agatgctgtc cgatgaccac gtgaatgaaa
241 tcatcataca ggttgagaat gtttcctctg gggtccaaag ccacccatcc tcaaatcaga
301 tttttcaaga aaaggtgctg ctagactcaa gcatcaacat ggttttgtca atatctgaca
361 ttgatgtgat agactctcag acagtcagca aaaggaatga ccaaaagggt aaccaggtgc
421 tgcggttttc aacatctttg aatgagtcga tgtctcagac ccttcatagc ctagaatgca
481 tgggcataga cactcctggt tcttcacatg aaactgttca aggacagaag ttaatcgcat
541 cccttatacc catgacatcc agagacagaa ttaaagccat caggaaccag ccaaggacca
601 tggaagagaa aaggaacctt aggaaaatag ttgacaaaga aaaaagcaaa cagacccatc
661 gtatccttca gctcaattgc tgtattcagt gtctgaactc catttcccgg gcttatcgga
721 gatccaagaa cagcctgtcg gaaattctga attccatcag cctgtggcag aagacgctga
781 agatcattgg aggcaagttt ggaaccagcg tcctctccta tttcaacttt ctgagatggc
841 ttttgaagtt caacattttc tcattcatcc tgaacttcag cttcatcata atccctcagt
901 ttaccgtggc caaaaagaac accctccagt tcactgggct ggagtttttc actggggtgg
961 gttattttag ggacacagtg atgtactatg gcttttacac caattccacc atccagcacg
1021 ggaacagcgg ggcatcctac aacatgcagc tggcctacat cttcacaatc ggagcatgct
1081 tgaccacctg cttcttcagt ttgctgttca gcatggccaa gtatttccgg aacaacttca
1141 ttaatcccca catttactcc ggagggatca ccaagctgat cttttgctgg gacttcactg
1201 tcactcatga aaaagctgtg aagctaaaac agaagaatct tagcactgag ataagggaga
1261 acctgtcaga gctccgtcag gagaattcca agttgacgtt caatcagctg ctgacccgct
1321 tctctgccta catggtagcc tgggttgtct ctacaggagt ggccatagcc tgctgtgcag
1381 ccgtttatta cctggctgag tacaacttag agttcctgaa gacacacagt aaccctgggg
1441 cggtgctgtt actgcctttc gttgtgtcct gcattaatct ggccgtgcca tgcatctact
1501 ccatgttcag gcttgtggag aggtacgaga tgccacggca cgaagtctac gttctcctga
1561 tccgaaacat ctttttgaaa atatcaatca ttggcattct ttgttactat tggctcaaca
1621 ccgtggccct gtctggtgaa gagtgttggg aaaccctcat tggccaggac atctaccggc
1681 tccttctgat ggattttgtg ttctctttag tcaattcctt cctgggggag tttctgagga
1741 gaatcattgg gatgcaactg atcacaagtc ttggccttca ggagtttgac attgccagga
1801 acgttctaga actgatctat gcacaaactc tggtgtggat tggcatcttc ttctgccccc
1861 tgctgccctt tatccaaatg attatgcttt tcatcatgtt ctactccaaa aatatcagcc
1921 tgatgatgaa tttccagcct ccgagcaaag cctggcgggc ctcacagatg atgactttct
1981 tcatcttctt gctctttttc ccatccttca ccggggtctt gtgcaccctg gccatcacca
2041 tctggagatt gaagccttca gctgactgtg gcccttttcg aggtctgcct ctcttcattc
2101 actccatcta cagctggatc gacaccctaa gtacacggcc tggctacctg tgggttgttt
2161 ggatctatcg gaacctcatt ggaagtgtgc acttcttttt catcctcacc ctcattgtgc
2221 taatcatcac ctatctttac tggcagatca cagagggaag gaagattatg ataaggctgc
2281 tccatgagca gatcattaat gagggcaaag ataaaatgtt cctgatagaa aaattgatca
2341 agctgcagga tatggagaag aaagcaaacc ccagctcact tgttctggaa aggagagagg
2401 tggagcaaca aggctttttg catttggggg aacatgatgg cagtcttgac ttgcgatcta
2461 gaagatcagt tcaagaaggt aatccaaggg cctgatgact cttttggtaa ccagacacca
2521 atcaaataag gggaggagat gaaaatggaa tgatttcttc catgccacct gtgcctttag
2581 gaactgccca gaagaaaatc caaggcttta gccaggagcg gaaactgact accatgtaat
2641 tatcaaagta aaattgggca ttccatgcta tttttaatac ctggattgct gatttttcaa
2701 gacaaaatac ttggggtttt ccaataaaga ttgttgtaat attgaaaaaa aaaaaaaaaa
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