LOCUS BC027470 2093 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens protocadherin gamma subfamily C, 3, mRNA (cDNA clone
IMAGE:4178411), complete cds.
ACCESSION BC027470
VERSION BC027470.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2093)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2093)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (04-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 52 Row: a Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2093
/db_xref="H-InvDB:HIT000040264"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4178411"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2093
/gene="PCDHGC3"
/gene_synonym="PC43"
/gene_synonym="PCDH-GAMMA-C3"
/gene_synonym="PCDH2"
/db_xref="GeneID:5098"
/db_xref="MIM:603627"
CDS 216..545
/gene="PCDHGC3"
/gene_synonym="PC43"
/gene_synonym="PCDH-GAMMA-C3"
/gene_synonym="PCDH2"
/codon_start=1
/product="PCDHGC3 protein"
/protein_id="AAH27470.1"
/db_xref="GeneID:5098"
/db_xref="MIM:603627"
/translation="MARPQQVAMATRRSRARRRRSNMEARPRATGQPLPNQPSFSLPA
PRPQSFRANPQNTGRGQGHAPLGKQKQVPSQHLPLPPQGVEYAKAVPLGTPIQSTAVP
MGVVGLL"
BASE COUNT 466 a 635 c 532 g 460 t
ORIGIN
1 caaccagttt gacacagaga tgctgcaagc catgatcttg gcgtccgcca gtgaagctgc
61 tgatgggagc tccaccctgg gagggggtgc cggcaccatg ggattgagcg cccgctacgg
121 accccagttc accctgcagc acgtgcccga ctaccgccag aatgtctaca tcccaggcag
181 caatgccaca ctgaccaacg cagctggcaa gcgggatggc aaggccccag caggtggcaa
241 tggcaacaag aagaagtcgg gcaagaagga gaagaagtaa catggaggcc aggccaagag
301 ccacagggca gcctctcccc aaccagccca gcttctcctt acctgcaccc aggcctcaga
361 gtttcagggc taacccccag aatactggta ggggccaagg ccatgctccc cttgggaaac
421 agaaacaagt gcccagtcag cacctacccc ttccccccca gggggttgaa tatgcaaaag
481 cagttccgct gggaaccccc atccaatcaa ctgctgtacc catgggggta gtggggttac
541 tgtagacacc aagaaccatt tgccacaccc cgtttagtta cagctgaact cctccatctt
601 ccaaatcaat caggcccatc catcccatgc ctccctcctc cccaccccac tccaacagtt
661 cctctttccc gagtaaggtg gttggggtgt tgaagtacca agtaacctac aagcctccta
721 gttctgaaaa gttggaaggg catcatgacc tcttggcctc tcctttgatt ctcaatcttc
781 ccccaaagca tggtttggtg ccagcccctt cacctccttc cagagcccaa gatcaatgct
841 caagttttgg aggacatgat caccatcccc atggtactga tgcttgctgg atttagggag
901 ggcattttgc taccaagcct cttcccaacg ccctggggac cagtcttctg ttttgttttt
961 cattgtttga cgtttccact gcatgccttg acttccccca cctcctcctc aaacaagaga
1021 ctccactgca tgttccaaga cagtatgggg tggtaagata aggaagggaa gtgtgtggat
1081 gtggatggtg ggggcatgga caaagcttga cacatcaagt tatcaaggcc ttggaggagg
1141 ctctgtatgt cctcagggga ctgacaacat cctccagatt ccagccataa accaataact
1201 aggctggacc cttcccacta cataataggg ctcagcccag gcagccagct ttgggctgag
1261 ctaacaggac caatggatta aactggcatt tcagtccaag gaagctcgaa gcaggtttag
1321 gaccaggtcc ccttgagagg tcagaggggc ctctgtgggt gctgggtact ccagaggtgc
1381 cactggtgga agggtcagcg gagccccagc aggaagggtg ggccagccag gccattctta
1441 gtccctgggt tggggaggca gggagctagg gcagggacca aatgaacaga aagtctcagc
1501 ccaggatggg gcttcttcaa cagggcccct gccctcctga agcctcagtc cttcaccttg
1561 ccaggtgccg tttctcttcc gtgaaggcca ctgcccaggt ccccagtgcg ccccctagtg
1621 gccatagcct ggttaaagtt ccccagtgcc tccttgtgca tagaccttct tctcccaccc
1681 ccttctgccc ctgggtcccc ggccatccag cggggctgcc agagaacccc agacctgccc
1741 ttacagtagt gtagcgcccc ctccctcttt cggctggtgt agaatagcca gtagtgtagt
1801 gcggtgtgct tttacgtgat ggcgggtggg cagcgggcgg cgggctccgc gcagccgtct
1861 gtccttgatc tgcccgcggc ggcccgtgtt gtgttttgtg ctgtgtccac gcgctaaggc
1921 gaccccctcc cccgtactga cttctcctat aagcgcttct cttcgcatag tcacgtagct
1981 cccaccccac cctcttcctg tgtctcacgc aagttttata ctctaatatt tatatggctt
2041 tttttcttcg acaaaaaaat aataaaacgt ttcttctgaa aaaaaaaaaa aaa
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