LOCUS BC027451 2305 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens protocadherin gamma subfamily C, 3, mRNA (cDNA clone
IMAGE:4944432), complete cds.
ACCESSION BC027451
VERSION BC027451.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2305)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2305)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 52 Row: e Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14277674
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2305
/db_xref="H-InvDB:HIT000040259"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4944432"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2305
/gene="PCDHGC3"
/gene_synonym="PC43"
/gene_synonym="PCDH-GAMMA-C3"
/db_xref="GeneID:5098"
/db_xref="HGNC:HGNC:8716"
/db_xref="MIM:603627"
CDS 114..518
/gene="PCDHGC3"
/gene_synonym="PC43"
/gene_synonym="PCDH-GAMMA-C3"
/codon_start=1
/product="protocadherin gamma subfamily C, 3"
/protein_id="AAH27451.1"
/db_xref="GeneID:5098"
/db_xref="HGNC:HGNC:8716"
/db_xref="MIM:603627"
/translation="MVPEAWRSGLQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS
NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK"
BASE COUNT 508 a 711 c 600 g 486 t
ORIGIN
1 gaaagccatg tcggactcgg cgcccagcgc ccaagcgcta acccgctgaa agtttctcag
61 cgaaatctca gggacgatct ggaccccgct gagaggaact gcttttgagt gagatggtcc
121 cagaggcctg gaggagcgga ctgcaagccc cgcccaacac ggactggcgt ttctctcagg
181 cccagagacc cggcaccagc ggctcccaaa atggcgatga caccggcacc tggcccaaca
241 accagtttga cacagagatg ctgcaagcca tgatcttggc gtccgccagt gaagctgctg
301 atgggagctc caccctggga gggggtgccg gcaccatggg attgagcgcc cgctacggac
361 cccagttcac cctgcagcac gtgcccgact accgccagaa tgtctacatc ccaggcagca
421 atgccacact gaccaacgca gctggcaagc gggatggcaa ggccccagca ggtggcaatg
481 gcaacaagaa gaagtcgggc aagaaggaga agaagtaaca tggaggccag gccaagagcc
541 acagggcagc ctctccccaa ccagcccagc ttctccttac ctgcacccag gcctcagagt
601 ttcagggcta acccccagaa tactggtagg ggccaaggcc atgctcccct tgggaaacag
661 aaacaagtgc ccagtcagca cctacccctt cccccccagg gggttgaata tgcaaaagca
721 gttccgctgg gaacccccat ccaatcaact gctgtaccca tgggggtagt ggggttactg
781 tagacaccaa gaaccatttg ccacaccccg tttagttaca gctgaactcc tccatcttcc
841 aaatcaatca ggcccatcca tcccatgcct ccctcctccc caccccactc caacagttcc
901 tctttcccga gtaaggtggt tggggtgttg aagtaccaag taacctacaa gcctcctagt
961 tctgaaaagt tggaagggca tcatgacctc ttggcctctc ctttgattct caatcttccc
1021 ccaaagcatg gtttggtgcc agccccttca cctccttcca gagcccaaga tcaatgctca
1081 agttttggag gacatgatca ccatccccat ggtactgatg cttgctggat ttagggaggg
1141 cattttgcta ccaagcctct tcccaacgcc ctggggacca gtcttctgtt ttgtttttca
1201 ttgtttgacg tttccactgc atgccttgac ttcccccacc tcctcctcaa acaagagact
1261 ccactgcatg ttccaagaca gtatggggtg gtaagataag gaagggaagt gtgtggatgt
1321 ggatggtggg ggcatggaca aagcttgaca catcaagtta tcaaggcctt ggaggaggct
1381 ctgtatgtcc tcaggggact gacaacatcc tccagattcc agccataaac caataactag
1441 gctggaccct tcccactaca taatagggct cagcccaggc agccagcttt gggctgagct
1501 aacaggacca atggattaaa ctggcatttc agtccaagga agctcgaagc aggtttagga
1561 ccaggtcccc ttgagaggtc agaggggcct ctgtgggtgc tgggtactcc agaggtgcca
1621 ctggtggaag ggtcagcgga gccccagcag gaagggtggg ccagccaggc cattcttagt
1681 ccctgggttg gggaggcagg gagctagggc agggaccaaa tgaacagaaa gtctcagccc
1741 aggatggggc ttcttcaaca gggcccctgc cctcctgaag cctcagtcct tcaccttgcc
1801 aggtgccgtt tctcttccgt gaaggccact gcccaggtcc ccagtgcgcc ccctagtggc
1861 catagcctgg ttaaagttcc ccagtgcctc cttgtgcata gaccttcttc tcccaccccc
1921 ttctgcccct gggtccccgg ccatccagcg gggctgccag agaaccccag acctgccctt
1981 acagtagtgt agcgccccct ccctctttcg gctggtgtag aatagccagt agtgtagtgc
2041 ggtgtgcttt tacgtgatgg cgggtgggca gcgggcggcg ggctccgcgc agccgtctgt
2101 ccttgatctg cccgcggcgg cccgtgttgt gttttgtgct gtgtccacgc gctaaggcga
2161 ccccctcccc cgtactgact tctcctataa gcgcttctct tcgcatagtc acgtagctcc
2221 caccccaccc tcttcctgtg tctcacgcaa gttttatact ctaatattta tatggctttt
2281 tttcttcgac aaaaaaaaaa aaaaa
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