LOCUS BC027308 3133 bp mRNA linear HUM 06-MAR-2007
DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, A, mRNA
(cDNA clone MGC:21065 IMAGE:3920094), complete cds.
ACCESSION BC027308
VERSION BC027308.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3133)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3133)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: c Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18450368.
FEATURES Location/Qualifiers
source 1..3133
/db_xref="H-InvDB:HIT000040254"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21065 IMAGE:3920094"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3133
/gene="PTPRA"
/gene_synonym="HEPTP"
/gene_synonym="HLPR"
/gene_synonym="HPTPA"
/gene_synonym="HPTPalpha"
/gene_synonym="LRP"
/gene_synonym="R-PTP-alpha"
/gene_synonym="RPTPA"
/db_xref="GeneID:5786"
/db_xref="HGNC:HGNC:9664"
/db_xref="MIM:176884"
CDS 199..2580
/gene="PTPRA"
/gene_synonym="HEPTP"
/gene_synonym="HLPR"
/gene_synonym="HPTPA"
/gene_synonym="HPTPalpha"
/gene_synonym="LRP"
/gene_synonym="R-PTP-alpha"
/gene_synonym="RPTPA"
/codon_start=1
/product="protein tyrosine phosphatase, receptor type, A"
/protein_id="AAH27308.1"
/db_xref="GeneID:5786"
/db_xref="HGNC:HGNC:9664"
/db_xref="MIM:176884"
/translation="MDSWFILVLLGSGLICVSANNATTVAPSVGITRLINSSTAEPVK
EEAKTSNPTSSLTSLSVAPTFSPNITLGPTYLTTVNSSDSDNGTTRTASTNSIGITIS
PNGTWLPDNQFTDARTEPWEGNSSTAATTPETFPPSDETPIIAVMVALSSLLVIVFII
IVLYMLRFKKYKQAGSHSNSFRLSNGRTEDVEPQSVPLLARSPSTNRKYPPLPVDKLE
EEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLT
PVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLK
ERKECKCAQYWPDQGCWTYGNIRVSVEDVTVLVDYTVRKFCIQQVGDMTNRKPQRLIT
QFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAML
DMMHTERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLYGDTELEVTSLETH
LQKIYNKIPGTSNNGLEEEFKKLTSIKIQNDKMRTGNLPANMKKNRVLQIIPYEFNRV
IIPVKRGEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLT
ELEERGQEKCAQYWPSDGLVSYGDITVELKKEEECESYTVRDLLVTNTRENKSRQIRQ
FHFHGWPEVGIPSDGKGMISIIAAVQKQQQQSGNHPITVHCSAGAGRTGTFCALSTVL
ERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDAFSDYANFK"
BASE COUNT 914 a 755 c 743 g 721 t
ORIGIN
1 aaacgccgcc gcggagccga ggcggagccg ctgtcctcgt ccccagcggt cccgcccaac
61 gcccgactct gtgacacaac taaaaaaaaa caaaggtatt tatggaattc cactgagtgg
121 taatggatga tgcagttcaa ataactaagg acacatgttc aaagagcata attaactttt
181 taaaagaagc taataagcat ggattcctgg ttcattcttg ttctgctcgg cagtggtctg
241 atatgtgtca gtgccaacaa tgctaccaca gttgcacctt ctgtaggaat tacaagatta
301 attaactcat caacggcaga accagttaaa gaagaggcca aaacttcaaa tccaacttct
361 tcactaactt ctctttctgt ggcaccaaca ttcagcccaa atataactct gggacccacc
421 tatttaacca ctgtcaattc ttcagactct gacaatggga ccacaagaac agcaagcacc
481 aattctatag gcattacaat ttcaccaaat ggaacgtggc ttccagataa ccagttcacg
541 gatgccagaa cagaaccctg ggaggggaat tccagcaccg cagcaaccac tccagaaact
601 ttccctcctt cagatgagac accaattatt gcggtgatgg tggccctgtc ctctctgcta
661 gtgatcgtgt ttattatcat agttttgtac atgttaaggt ttaagaaata caagcaagct
721 gggagccatt ccaattcttt ccgcttatcc aacggccgca ctgaggatgt ggagccccag
781 agtgtgccac ttctggccag atccccaagc accaacagga aatacccacc cctgcccgtg
841 gacaagctgg aagaggaaat taaccggaga atggcagacg acaataagct cttcagggag
901 gaattcaacg ctctccctgc atgtcctatc caggccacct gtgaggctgc ttccaaggag
961 gaaaacaagg aaaaaaatcg atatgtaaac atcttgcctt atgaccactc tagagtccac
1021 ctgacaccgg ttgaaggggt tccagattct gattacatca atgcttcatt catcaacggt
1081 taccaagaaa agaacaaatt cattgctgca caaggaccaa aagaagaaac ggtgaatgat
1141 ttctggcgga tgatctggga acaaaacaca gccaccatcg tcatggttac caacctgaag
1201 gagagaaagg agtgcaagtg cgcccagtac tggccagacc aaggctgctg gacctatggg
1261 aatattcggg tgtctgtaga ggatgtgact gtcctggtgg actacacagt acggaagttc
1321 tgcatccagc aggtgggcga catgaccaac agaaagccac agcgcctcat cactcagttc
1381 cactttacca gctggccaga ctttggggtg ccttttaccc cgatcggcat gctcaagttc
1441 ctcaagaagg tgaaggcctg taaccctcag tatgcagggg ccatcgtggt ccactgcagt
1501 gcaggtgtag ggcgtacagg tacctttgtc gtcattgatg ccatgctgga catgatgcat
1561 acagaacgga aggtggacgt gtatggcttt gtgagccgga tccgggcaca gcgctgccag
1621 atggtgcaaa ccgatatgca gtatgtcttc atataccaag cccttctgga gcattatctc
1681 tatggagata cagaactgga agtgacctct ctagaaaccc acctgcagaa aatttacaac
1741 aaaatcccag ggaccagcaa caatggatta gaggaggagt ttaagaagtt aacatcaatc
1801 aaaatccaga atgacaagat gcggactgga aaccttccag ccaacatgaa gaagaaccgt
1861 gttttacaga tcattccata tgaattcaac agagtgatca ttccagttaa gcggggcgaa
1921 gagaatacag actatgtgaa cgcatccttt attgatggct accggcagaa ggactcctat
1981 atcgccagcc agggccctct tctccacaca attgaggact tctggcgaat gatctgggag
2041 tggaaatcct gctctatcgt gatgctaaca gaactggagg agagaggcca ggagaagtgt
2101 gcccagtact ggccatctga tggactggtg tcctatggag atattacagt ggaactgaag
2161 aaggaggagg aatgtgagag ctacaccgtc cgagacctcc tggtcaccaa caccagggag
2221 aataagagcc ggcagatccg gcagttccac ttccatggct ggcctgaagt gggcatcccc
2281 agtgacggaa agggcatgat cagcatcatc gccgccgtgc agaagcagca gcagcagtca
2341 gggaaccacc ccatcaccgt gcactgcagc gccggggcag gaaggacggg gaccttctgt
2401 gccctgagca ccgtcctgga gcgtgtgaaa gcagagggga ttttggatgt cttccagact
2461 gtcaagagcc tgcggctaca gaggccacac atggtccaga cactggaaca gtatgagttc
2521 tgctacaagg tggtgcagga gtatattgat gcattctcag attatgccaa cttcaagtaa
2581 gcggcaacaa gggtccgtgg accaggagga ttgcctttaa tattttgtaa tattctgttt
2641 tgttaatata ccccaaattg tgtatatatc ttataactgt tttagaaatt ggtacatagg
2701 cttctattac ctattaggtg gaaattttat atgtaaatgt gttagcactg atagtccttt
2761 ttccaatgtt ttattgggga attaaatagt gtgatgtttg gattgatatc gtgaaatcct
2821 cagccgagaa attgggctgg attgtgcttt ggttaataca tctttcccta aagaagataa
2881 acacaaaatc cattccaggt agctcggcac caactaagaa aaaaagcaca aagttctcag
2941 agctctcgag gaaagtggtt gtccccgtac caccatgcac tgtaaatatc cctcccctct
3001 ctccctggtc ccctccccca tccccaccac tgatatcatg gggagtaata ggaccagagc
3061 ggtatctctg gcaccacact agggactatc aggtaataaa agctttgact ccctgaaaaa
3121 aaaaaaaaaa aaa
//