LOCUS BC027178 1424 bp mRNA linear HUM 18-JAN-2007 DEFINITION Homo sapiens PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae), mRNA (cDNA clone IMAGE:4343048), partial cds. ACCESSION BC027178 VERSION BC027178.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1424) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1424) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (04-APR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 26 Row: l Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: GenomeScan gene prediction, Similarity but not identity to protein. FEATURES Location/Qualifiers source 1..1424 /db_xref="H-InvDB:HIT000040246" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4343048" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_85" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..1424 /gene="PRPF40A" /gene_synonym="FBP-11" /gene_synonym="FBP11" /gene_synonym="FLAF1" /gene_synonym="HIP10" /gene_synonym="HYPA" /gene_synonym="NY-REN-6" /db_xref="GeneID:55660" /db_xref="HGNC:HGNC:16463" CDS <1..649 /gene="PRPF40A" /gene_synonym="FBP-11" /gene_synonym="FBP11" /gene_synonym="FLAF1" /gene_synonym="HIP10" /gene_synonym="HYPA" /gene_synonym="NY-REN-6" /codon_start=2 /product="PRPF40A protein" /protein_id="AAH27178.1" /db_xref="GeneID:55660" /db_xref="HGNC:HGNC:16463" /translation="MKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLE SERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKK RQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRE SEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ" BASE COUNT 539 a 209 c 277 g 399 t ORIGIN 1 gatgaaacga aaagaatctg catttaagag tatgttaaaa caagctgctc ctccgataga 61 attggatgct gtctgggaag atatccgtga gagatttgta aaagagccag catttgagga 121 cataactcta gaatctgaaa gaaaacgaat atttaaagat tttatgcatg tgcttgagca 181 tgaatgtcag catcatcatt caaagaacaa gaaacattct aagaaatcta aaaaacatca 241 taggaaacgt tcccgctctc gatcggggtc agattcagat gatgatgata gccattcaaa 301 gaaaaaaaga cagcgatcag agtctcgttc tgcttcagaa cattcttcta gtgcagagtc 361 tgagagaagt tataaaaagt caaaaaagca taagaagaaa agtaagaaga ggagacataa 421 atctgactct ccagaatccg atgctgagcg agagaaggat aaaaaagaaa aagatcggga 481 aagtgaaaaa gacagaacta gacaaagatc agaatcaaaa cacaaatcgc ctaagaaaaa 541 gactggaaag gattctggta attgggatac ttctggcagc gaactgagtg aaggggaatt 601 ggaaaagcgc agaagaaccc ttttggagca actggatgat gatcaataaa ttataccaaa 661 tatatgttta cagtatgatt taaagtctga ttcagaccag ggactctatt ttaagttcaa 721 ctgaaataac actgggtttt aattatatca caggaaaaaa aaagtgcatt taagtattgt 781 tatcgtggac tttataaaag caaaggaaat tgaaagtaac ttttgattct gtatcaagaa 841 tcatattttc atacagtcat aactgtcttt ctgtgaccct ttcacagggc actgtaggat 901 ggattaaagg tggcaattta ctgataactg cagatgtctc tactttgttc taaaatctaa 961 gtcataaggt gatttgattt actttataga agctggattt tgaagatcta atgaaaaatt 1021 ttttgataat atagtagtac aaaaaaagca ccagcaactg ataaaaattg cttttttgtg 1081 cgctacccaa ctggttaaag ccaatgtgat cttttatggt gaaactccta agaaacaggt 1141 ggttttgctg gaaacttggt agacccttaa ttatagtggt gctaatgagc actactgtaa 1201 tataaagcca ccattatttt ttatcaaaca tctgaataca ttttacaaag gctattgtga 1261 gggcattatt ttgagcatct attttgaggt gatgtttaaa aaaactttaa catcaaatca 1321 aattgtaaat taatttaaat atattgcctt aaggacctac taaagaatgt gccaccagac 1381 tttaagtgat agttgcaata tccttgtcta aaaaaaaaaa aaaa //