LOCUS BC026895 3405 bp mRNA linear HUM 27-OCT-2006
DEFINITION Homo sapiens zinc finger protein 488, mRNA (cDNA clone MGC:24980
IMAGE:4932309), complete cds.
ACCESSION BC026895
VERSION BC026895.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3405)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3405)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 29 Row: n Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40255102.
FEATURES Location/Qualifiers
source 1..3405
/db_xref="H-InvDB:HIT000091302"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:24980 IMAGE:4932309"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3405
/gene="ZNF488"
/gene_synonym="FLJ32104"
/db_xref="GeneID:118738"
/db_xref="HGNC:HGNC:23535"
CDS 366..1067
/gene="ZNF488"
/gene_synonym="FLJ32104"
/codon_start=1
/product="ZNF488 protein"
/protein_id="AAH26895.1"
/db_xref="GeneID:118738"
/db_xref="HGNC:HGNC:23535"
/translation="MKDRQVDAQAQEREHDDPTGQPGAPQLTQNIPRGPAGSKVFSVW
PSGARSEQRSAFSKPTKRPAERPELTSVFPAGESADALGELSGLLNTTDLACWGRLST
PKLLVGDLWNLQALPQNAPLCSTFLGAPTLWLEHTQAQVPPPSSSSTTSWALLPPTLT
SLGLSTQNWCAKCNLSFRLTSDLVFHMRSHHKKEHAGPDPHSQKRREEALACPVCQEH
FRERHHLSRHMTSHS"
BASE COUNT 773 a 979 c 844 g 809 t
ORIGIN
1 gctgcaccag cacctcttgc tccacatctc cagagagccc agggccctgt ggccgagtgt
61 gtccagccca gtgtcatggg gagcttccat atctcatggc tccttgctgg gccaagccct
121 ccagaacccc aaacccccaa agactgatga atgccagagt ggccaccttg cttatctgtg
181 gccccggccc tggtgatcac catggcagct ggaaagggag ccccgttgag cccatcggct
241 gaaaacagat ggcgacttag cgaacctgag ctgggccggg gctgcaagcc agtgctgctc
301 gagaagacga accgcctggg ccctgaggct gctgtgggca gagcgccttc acggagctgc
361 cgaggatgaa ggaccggcag gtggatgctc aggcccagga gagggagcac gatgacccca
421 caggccaacc tggtgcccca cagctgaccc agaacatccc cagaggccca gctggcagca
481 aagtcttctc tgtgtggccc agcggagcac gaagtgagca aagaagcgcc tttagcaaac
541 caaccaagcg accagcagag aggcctgagc taacctcagt cttccctgca ggggaatctg
601 cagatgccct gggggagctg tctggactcc tcaacactac agacctcgct tgttggggtc
661 gactttcaac tcccaagctt ttggttggtg atttgtggaa cttgcaagca ttgccacaga
721 atgctccact ctgtagcact tttctgggtg cccctacact gtggctggag catacccagg
781 cccaggtgcc cccaccctca tcatcctcca ccacttcgtg ggccctcctg ccacccaccc
841 tcacctccct gggcttgtcc acccagaact ggtgtgcaaa gtgcaacctg tcctttcgcc
901 taacgtccga cctggtcttt cacatgcgat cccaccacaa aaaggagcat gcggggcctg
961 acccacattc tcagaagcgg agagaagagg cccttgcctg ccctgtgtgc caggagcact
1021 tccgggagcg ccaccacctc tcccggcaca tgacttctca cagctagcag gtgaccgcag
1081 aatgacctgc tgggtgcagc agccagcctt tggcagaggg gggctccctg ggcctgcgtt
1141 gagggggctg tcatggtcct ttgcagagct gctgcttttg gcattcatag ataaacagct
1201 caggcataat ttgaaaaagc cacacctgca tgatgtgttt tgaaggaaat gaagtcctga
1261 aataaagtga tgggctttgc aaatccaggg tagaggccct aacaggcaca gagagcaggg
1321 gcaactcctg gcacacatca tgggctttgg aggcacacaa gcctggattc gaatctgggc
1381 tctttcacat actagctgtg accctggaca aagagcttta acctgctgag tccccatttt
1441 ctcatctgtg aaatggagat gataacactg tgtcttaggt tggcattcag gtcacatgaa
1501 aggtgtgtgg aaagtggcca gcattctgcc tgcagaccct gagcactgag tcaacaaggt
1561 ttgtgatgat gtctgtacta gttagctatt gttattaaca agatctccat ggcagacaag
1621 ctaaagcatc tgcctaagtc gtgagtctgt gggttggctc aggttaagct gagcttggct
1681 gggcttggca gcaagtctca gatttgatca agtcatattc gttttcttct tcggctggtg
1741 ggctacccag agcgagcacg cttctctcgt ggtcatgcca agaacacagg agggtgagtc
1801 taacaagcac acctcaagcc tctgcttggg tcacattgcc aatgtcctct cagcccatac
1861 aagtggcagg accaggccca atattaagga gtggaaaagt gtaggctgcc cttggtgaag
1921 ctgtgacaag ggagtgacca tccatcccct ccacaggagg gtgaggaatt gggacaggta
1981 attccagcca atacctggtc catagttctt cacattgtga gtatatgaat acggggaaat
2041 agaaccccct ccccaccacc tacacacatg ctgttttacc ttccaagaat aggacatgtg
2101 caaaaactag gcttccagat cgtgaggctg gggagcattc taggtaccat ttattatcta
2161 ctgcgtttcg gtcagtagct gttgtaggta cccgcatcag cccttgttcc taaggatgtg
2221 tggagcccag gctgtactct ttgacattcc acaggtcagt ctgcgtgaaa gccctttgtg
2281 gggagtttcc aagccagtgt cgtttttgca ctggtttcca cctcactgtc agatattgtt
2341 cttttgatat gcagtttcca gccctccaat gagtccccag cacagatctc aggcttgtgg
2401 ctgggaataa gcccagctga gcaggtgggg atctcagcca gcctcccaga ctgcacctct
2461 tctattgctc tcctctgtcc accgttccag gcagcagcac tcccacctgg ctgctctgat
2521 gtcctcgctc cctccattcc tgcctctcac catgcacgca tccattgtcc acacacacac
2581 aaccagataa tcttctgaaa gtgtaactca gatgatgcct ccaaccctgt ggctgccctt
2641 cacacttaca ggcctaaccc cagcaggacc tgccagctgc ttcatgaaca agtccctgcc
2701 tcatgttaat tgcaagcact catttcactc tccctgtgtg ccaggcaata gcataagcac
2761 tggaagaata cagatgttat agtgagtcct acaatagccc tggaaggcaa gagctgtttc
2821 ctttccattt ctacaatgag tcaattgcag atgatgctat aacacttcca gtgtttctga
2881 cacttccctg aagctatacc tgctaccttc atgggccgag cttgccctta tgaggcccac
2941 aggtggcagt gggcagaggg gaccccgcta taccacctcg ctgctgttcc actgtctgct
3001 cccgtgttct gaccacagct ctggtgccgt ttctcaagcc tgggcttcat tcaacatttt
3061 ctatctagct cttcatggtg ctgctcctgc tatggttcca cagggcttct tctcgcaggt
3121 cagctcctta gagaggtctc ccagattccc cgtaaagcag ccctgcagcc tctgcctctc
3181 tcagccgcat caccctgttg cttccttcac agcatgtctc accatctgca accatctttc
3241 tgtttgtcgt cttgttgatt tgctgcctcc acactgtcag ctccttggga acagagattg
3301 gtttgtttac tgtgcatccc tggtgcccag aacagggcat ggcatattgt tggtgcataa
3361 taaatattgt ggaaataaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//