LOCUS BC026873 1826 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens fin bud initiation factor homolog (zebrafish), mRNA
(cDNA clone MGC:24932 IMAGE:4938507), complete cds.
ACCESSION BC026873
VERSION BC026873.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1826)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1826)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 29 Row: o Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42766421.
FEATURES Location/Qualifiers
source 1..1826
/db_xref="H-InvDB:HIT000040226"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:24932 IMAGE:4938507"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1826
/gene="FIBIN"
/db_xref="GeneID:387758"
/db_xref="HGNC:HGNC:33747"
CDS 218..853
/gene="FIBIN"
/codon_start=1
/product="fin bud initiation factor homolog (zebrafish)"
/protein_id="AAH26873.1"
/db_xref="GeneID:387758"
/db_xref="HGNC:HGNC:33747"
/translation="MVFLKFFCMSFFCHLCQGYFDGPLYPEMSNGTLHHYFVPDGDYE
ENDDPEKCQLLFRVSDHRRCSQGEGSQVGSLLSLTLREEFTVLGRQVEDAGRVLEGIS
KSISYDLDGEESYGKYLRRESHQIGDAYSNSDKSLTELESKFKQGQEQDSRQESRLNE
DFLGMLVHTRSLLKETLDISVGLRDKYELLALTIRSHGTRLGRLKNDYLKV"
BASE COUNT 454 a 409 c 470 g 493 t
ORIGIN
1 ggtgggtgca tcctgcgctg cggcgggcgc gctacccaga cgctggtgtg cagagccaca
61 tgaagcctgc tggggactgg gggccaggga gcagcaagcc agctgggact gaggcggacg
121 ctgtctcagg gagacgctga ctcgcaaaga cactcccttc cttgtgcctg ggtaataagt
181 ctcctcctgg ggtccctggc catcctgaat atccagaatg gtgtttctga agttcttctg
241 catgagtttc ttctgccacc tgtgtcaagg ctacttcgat ggccccctct acccagagat
301 gtccaatggg actctgcacc actacttcgt gcccgatggg gactatgagg agaacgatga
361 ccccgagaag tgccagctgc tcttcagggt gagtgaccac aggcgctgct cccaggggga
421 ggggagccag gttggcagcc tgctgagcct caccctgcgg gaggagttca ccgtgctggg
481 ccgccaggtg gaggatgctg ggcgcgtgct ggagggcatc agcaaaagca tctcctacga
541 cctagacggg gaagagagct atggcaagta cctgcggcgg gagtcccacc agatcgggga
601 tgcctactcc aactcggaca aatccctcac tgagctggag agcaagttca agcagggcca
661 ggaacaggac agccggcagg agagcaggct caacgaggac tttctgggaa tgctggtcca
721 caccaggtcc ctgctgaagg agacactgga catctctgtg gggctcaggg acaaatacga
781 gctgctggcc ctcaccatta ggagccatgg gacccgacta ggtcggctga aaaatgatta
841 tcttaaagta taggtggaag gatacaaatg ctagaaagag ggaatcaaat cagccccgtt
901 ttggagggtg ggggacagaa gatggggcta catttccccc atacctacta tttttttata
961 tcccgatttg cactttgaga atacatctaa ggtcatcttt caaaagagaa aaattggaca
1021 cttgagtgac tttgttttta gttttgtttt tgtacattat ttatgtgatt gttatggaat
1081 tgtcacctgg aaagaacaat tttaagcaat gtcatttcta gatgggtttc taattctgca
1141 gagacacccg tttcagccac atctaaaaga gcacagttta tgtggtgcgg aattaaactt
1201 ccccatcctg cagattatgt ggaaataccc aaagataata gtgcatagct cctttcagcc
1261 tctagccttc actcctgggc tccaaaagct atcccagttg cctgtttttc aaatgaggtt
1321 caaggtgctg ctttgcatgc ctgccaaccc atggaagttg tttcttactt cttttctctc
1381 ttatttatta accatggtct gagagttgtt tttgttctat gtaacagtat tgccacaaaa
1441 ctataggcaa atcgtgtttg cagggagatt tctgatgcct ctgtgggtgt gtgtaagtta
1501 aagtggccac atttaagaag gccaagcttt gtagtggttg cacagtcaca ctgatatgct
1561 gatttgctct ttctcattgt atgtctatgc tttgtcatca gtgctatagt aaattacaaa
1621 gaaataggta gattgtatga acatacccac aaatgcctat gatttaggtt accaatgtat
1681 tctttctcat ttggggtttt gcttctgtct gtctgtttat tggaaacttg tacttcaagt
1741 agggggaatc gtaattctaa taactcctta gctaagtttt attattcagg caataaacat
1801 gttttcatgt aaaaaaaaaa aaaaaa
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