LOCUS BC026788 1668 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens reticulon 4, mRNA (cDNA clone IMAGE:3862911), complete
cds.
ACCESSION BC026788
VERSION BC026788.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1668)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1668)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: h Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47519489
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1668
/db_xref="H-InvDB:HIT000040225"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3862911"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_66"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1668
/gene="RTN4"
/gene_synonym="ASY"
/gene_synonym="Nbla00271"
/gene_synonym="Nbla10545"
/gene_synonym="NI220/250"
/gene_synonym="NOGO"
/gene_synonym="NOGO-A"
/gene_synonym="NSP"
/gene_synonym="NSP-CL"
/gene_synonym="RTN-X"
/gene_synonym="RTN4-A"
/gene_synonym="RTN4-B1"
/gene_synonym="RTN4-B2"
/gene_synonym="RTN4-C"
/db_xref="GeneID:57142"
/db_xref="HGNC:HGNC:14085"
/db_xref="MIM:604475"
CDS 187..1308
/gene="RTN4"
/gene_synonym="ASY"
/gene_synonym="Nbla00271"
/gene_synonym="Nbla10545"
/gene_synonym="NI220/250"
/gene_synonym="NOGO"
/gene_synonym="NOGO-A"
/gene_synonym="NSP"
/gene_synonym="NSP-CL"
/gene_synonym="RTN-X"
/gene_synonym="RTN4-A"
/gene_synonym="RTN4-B1"
/gene_synonym="RTN4-B2"
/gene_synonym="RTN4-C"
/codon_start=1
/product="reticulon 4"
/protein_id="AAH26788.1"
/db_xref="GeneID:57142"
/db_xref="HGNC:HGNC:14085"
/db_xref="MIM:604475"
/translation="MEDLDQSPLVSSSDSPPRPQPAFKYQFVREPEDEEEEEEEEEED
EDEDLEELEVLERKPAAGLSAAPVPTAPAAGAPLMDFGNDFVPPAPRGPLPAAPPVAP
ERQPSWDPSPVSSTVPAPSPLSAAAVSPSKLPEDDEPPARPPPPPPASVSPQAEPVWT
PPAPAPAAPPSTPAAPKRRGSSGSVVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIV
SVTAYIALALLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSA
LGHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPV
IYERHQAQIDHYLGLANKNVKDAMAKIQAKIPGLKRKAE"
BASE COUNT 364 a 475 c 447 g 382 t
ORIGIN
1 cgcatcaccg gcgcggaggc aggaggagca gtctcattgt tccgggagcc gtcaccacag
61 taggtccctc ggctcagtcg gcccagcccc tctcagtcct ccccaacccc cacaaccgcc
121 cgcggctctg agacgcggcc ccggcggcgg cggcagcagc tgcagcatca tctccaccct
181 ccagccatgg aagacctgga ccagtctcct ctggtctcgt cctcggacag cccaccccgg
241 ccgcagcccg cgttcaagta ccagttcgtg agggagcccg aggacgagga ggaagaagag
301 gaggaggaag aggaggacga ggacgaagac ctggaggagc tggaggtgct ggagaggaag
361 cccgccgccg ggctgtccgc ggccccagtg cccaccgccc ctgccgccgg cgcgcccctg
421 atggacttcg gaaatgactt cgtgccgccg gcgccccggg gacccctgcc ggccgctccc
481 cccgtcgccc cggagcggca gccgtcttgg gacccgagcc cggtgtcgtc gaccgtgccc
541 gcgccatccc cgctgtctgc tgccgcagtc tcgccctcca agctccctga ggacgacgag
601 cctccggccc ggcctccccc tcctcccccg gccagcgtga gcccccaggc agagcccgtg
661 tggaccccgc cagccccggc tcccgccgcg cccccctcca ccccggccgc gcccaagcgc
721 aggggctcct cgggctcagt ggttgttgac ctcctgtact ggagagacat taagaagact
781 ggagtggtgt ttggtgccag cctattcctg ctgctttcat tgacagtatt cagcattgtg
841 agcgtaacag cctacattgc cttggccctg ctctctgtga ccatcagctt taggatatac
901 aagggtgtga tccaagctat ccagaaatca gatgaaggcc acccattcag ggcatatctg
961 gaatctgaag ttgctatatc tgaggagttg gttcagaagt acagtaattc tgctcttggt
1021 catgtgaact gcacgataaa ggaactcagg cgcctcttct tagttgatga tttagttgat
1081 tctctgaagt ttgcagtgtt gatgtgggta tttacctatg ttggtgcctt gtttaatggt
1141 ctgacactac tgattttggc tctcatttca ctcttcagtg ttcctgttat ttatgaacgg
1201 catcaggcac agatagatca ttatctagga cttgcaaata agaatgttaa agatgctatg
1261 gctaaaatcc aagcaaaaat ccctggattg aagcgcaaag ctgaatgaaa acgcccaaaa
1321 taattagtag gagttcatct ttaaagggga tattcatttg attatacggg ggagggtcag
1381 ggaagaacga accttgacgt tgcagtgcag tttcacagat cgttgttaga tctttatttt
1441 tagccatgca ctgttgtgag gaaaaattac ctgtcttgac tgccatgtgt tcatcatctt
1501 aagtattgta agctgctatg tatggattta aaccgtaatc atatcttttt cctatctatc
1561 tgaggcactg gtggaataaa aaacctgtat attttacttt gttgcagata gtcttgccgc
1621 atcttggcaa gttgcagaga tggtggagct agaaaaaaaa aaaaaaaa
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