LOCUS BC026355 3347 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens Bardet-Biedl syndrome 10, mRNA (cDNA clone MGC:26830
IMAGE:4817227), complete cds.
ACCESSION BC026355
VERSION BC026355.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3347)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3347)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: n Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31377692.
FEATURES Location/Qualifiers
source 1..3347
/db_xref="H-InvDB:HIT000040216"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26830 IMAGE:4817227"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3347
/gene="BBS10"
/db_xref="GeneID:79738"
/db_xref="HGNC:HGNC:26291"
/db_xref="MIM:610148"
CDS 70..2241
/gene="BBS10"
/codon_start=1
/product="Bardet-Biedl syndrome 10"
/protein_id="AAH26355.2"
/db_xref="GeneID:79738"
/db_xref="HGNC:HGNC:26291"
/db_xref="MIM:610148"
/translation="MLSSMAAAGSVKAALQVAEVLEAIVSCCVGPEGRQVLCTKPTGE
VLLSRNGGRLLEALHLEHPIARMIVDCVSSHLKKTGDGAKTFIIFLCHLLRGLHAITD
REKDPLMCENIQTHGRHWKNCSRWKFISQALLTFQTQILDGIMDQYLSRHFLSIFSSA
KERTLCRSSLELLLEAYFCGRVGRNNHKFISQLMCDYFFKCMTCKSGIGVFELVDDHF
VELNVGVTGLPVSDSRIIAGLVLQKDFSVYRPADGDMRMVIVTETIQPLFSTSGSEFI
LNSEAQFQTSQFWIMEKTKAIMKHLHSQNVKLLISSVKQPDLVSYYAGVNGISVVECL
SSEEVSLIRRIIGLSPFVPPQAFSQCEIPNTALVKFCKPLILRSKRYVHLGLISTCAF
IPHSIVLCGPVHGLIEQHEDALHGALKMLRQLFKDLDLNYMTQTNDQNGTSSLFIYKN
SGESYQAPDPGNGSIQRPYQDTVAENKDALEKTQTYLKVHSNLVIPDVELETYIPYST
PTLTPTDTFQTVETLTCLSLERNRLTDYYEPLLKNNSTAYSTRGNRIEISYENLQVTN
ITRKGSMLPVSCKLPNMGTSQSYLSSSMPAGCVLPVGGNFDILLHYYLLNYAKKCHQS
EETMVSMIIANALLGIPKVLYKSKTGKYSFPHTYIRAVHALQTNQPLVSSQTGLESVM
GKYQLLTSVLQCLTKILTIDMVITVKRHPQKVHNQDSEDEL"
BASE COUNT 1033 a 603 c 628 g 1083 t
ORIGIN
1 gttcccaccc ctgttttcgg tcggcccggg tgttctgcaa gctggtcaaa aaggggaagc
61 ggctcagata tgttaagttc tatggccgct gcagggtctg tgaaggcggc gttgcaggtg
121 gccgaggtgc tggaagccat cgtgagctgc tgcgtggggc ccgagggacg gcaagttttg
181 tgtacgaagc ccactggcga ggtgcttctc agccggaatg gaggccgcct cctggaggcg
241 ctacacttag agcatcccat agccaggatg atagtggact gtgtttccag tcatctcaaa
301 aaaacaggag atggtgcaaa aacatttatt atctttcttt gccatttgct tagaggactt
361 catgcaatca cagacagaga aaaggatcct ttgatgtgtg aaaacattca aacccatgga
421 aggcattgga aaaattgttc tcggtggaaa tttatttccc aggctctcct aacgtttcag
481 acacaaatat tagacggtat tatggaccag tacctaagta gacacttttt gtctatcttt
541 tcgtctgcta aagagagaac attgtgtagg agctctttag agttgctctt agaagcatac
601 ttttgtggaa gagtgggaag aaataatcat aaatttattt cacagttgat gtgtgactac
661 tttttcaagt gtatgacttg taaaagtggg attggtgtat ttgagttagt ggatgaccat
721 tttgtagagt tgaatgttgg tgtcactggc cttcctgttt cagattccag gatcatagct
781 ggtcttgtgc ttcagaaaga tttttctgtg taccgcccag cagatggtga catgcgaatg
841 gtgatagtaa cagaaaccat tcagcctctt ttttccactt ctggatcaga gtttattcta
901 aattcagaag cacagtttca gacatctcaa ttttggatta tggaaaagac aaaagcaata
961 atgaaacatc tacatagtca gaatgtaaaa ttgctcatat ctagtgtgaa acaaccagat
1021 ttagttagtt attatgcagg ggtgaatggc atatcagtgg ttgagtgttt atcatcagaa
1081 gaagtttctc ttatccggag gatcattggt ctttctccat ttgtaccacc acaggccttt
1141 tcgcagtgtg aaatacctaa cactgctttg gtgaaatttt gtaaacctct tatccttaga
1201 tccaaaagat atgttcatct aggcttgata agcacatgtg catttatacc acactctata
1261 gttctttgtg gaccagtgca tggtctcatt gaacaacatg aggatgcttt acatggagca
1321 cttaaaatgc ttcggcaatt atttaaagac cttgatctaa attacatgac acaaaccaat
1381 gaccaaaatg gcacttcaag tctttttatt tataagaaca gtggagaaag ttatcaagca
1441 ccagatccgg gtaatggctc aatacaaagg ccttatcagg acacagttgc agagaacaaa
1501 gatgcattgg aaaaaactca aacatattta aaagtacatt ctaatttggt aattccagat
1561 gtagaattag aaacatatat tccgtattca acccccacac tgacaccaac agatacattc
1621 caaacagttg aaacgctgac atgtttgtct ttggaaagaa acaggctaac tgattattat
1681 gaaccattac tcaagaacaa ttccactgct tattcaacaa ggggaaatag aatagaaatt
1741 tcttacgaaa atttacaggt cacaaatatt actagaaagg gaagcatgtt accagtgagc
1801 tgtaagttac cgaatatggg tacttcccag agttaccttt cctcatctat gccagctggt
1861 tgtgttttgc cagtaggtgg taattttgat atcttgttac attactatct tctcaattat
1921 gccaaaaaat gccatcaatc agaagaaacc atggttagta tgataatagc taatgcactt
1981 ttaggcattc ccaaagtcct ttataaatct aaaacaggaa agtacagctt tccacataca
2041 tatataagag ctgtccatgc actgcaaacc aatcaaccct tggtaagcag tcagacaggt
2101 ttggaatcag taatgggtaa ataccagcta ctaacttcag ttcttcagtg tttgacaaaa
2161 atattaacca ttgacatggt aatcactgtt aagagacacc ctcagaaagt tcacaatcaa
2221 gattcagaag atgaactata acatcagaag tttttaatta accaaacttt tcatctaact
2281 caagccaagt aaagcagtca tgtgaccact ggttctaaag tcagttcagt ctacttagga
2341 aaatagcgta actttaaaag tctttagaag aagcacacta aggtcaccag accagataca
2401 aatattaaat tactttatgg aacaaatcta gaggggaagc caagatttgg ctaagtgtgt
2461 ctgttttttc cctattttat gcctctgtgt ctcagctctg tgttagccta tgtgtttagg
2521 ggagggtttt tctttatagc tcctttttac tctcctgtat ctttttcact ccagccctcc
2581 ttcatcgtta catgtttagt tcatagaatc atttaatctc tgatttgggt gggcttattc
2641 taattgtttt taatattgaa tacattattt gcattaattt tccctactca tactttgtaa
2701 agctgagtaa aaggctcaaa ttattttttt caaaaagcat aaaattaaat tagcagtgag
2761 taaaaggctc aaattttttt tcaaaaagca taaaattaat ttttactttt atgtggtcat
2821 tggtttactg ccacttcatt tggaaaactt ggatagattt tcgcctttga tatacctttg
2881 aatatatgtt acctgaaata taactgtgca ttgttaactc tttcatttct gtagtaaaag
2941 gttaatacta gaaaggatat gcaattaata ctttgatttt ctcctgaccc caagagcttg
3001 taaggatatg tcatgtattt actggttttt cttgtatctg gtgcatagcc agagttccac
3061 agtaacaaat aatttgacaa tttttatttc taatgtttat ttctgtttta tttttaattt
3121 ttatttctaa tttatttcat ttacaaatgt tcatatttta aaaacttgtc aatgtaaata
3181 atatgatgca tcttatcatg gacaaggaca gtgttttcta cctttatcag ttctctgtaa
3241 tacccaaaac agtgctgtat ttactccaag tattcagaag tgcttgttga ataaaacagt
3301 gttatcttta attcattcct ttaaaaaaaa agaaaaaaaa aaaaaaa
//