LOCUS BC026338 3012 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens intercellular adhesion molecule 5, telencephalin, mRNA
(cDNA clone MGC:26509 IMAGE:4814795), complete cds.
ACCESSION BC026338
VERSION BC026338.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3012)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3012)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: l Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 12545403.
FEATURES Location/Qualifiers
source 1..3012
/db_xref="H-InvDB:HIT000040206"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26509 IMAGE:4814795"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3012
/gene="ICAM5"
/gene_synonym="TLN"
/db_xref="GeneID:7087"
/db_xref="HGNC:HGNC:5348"
/db_xref="MIM:601852"
CDS 64..2838
/gene="ICAM5"
/gene_synonym="TLN"
/codon_start=1
/product="intercellular adhesion molecule 5,
telencephalin"
/protein_id="AAH26338.1"
/db_xref="GeneID:7087"
/db_xref="HGNC:HGNC:5348"
/db_xref="MIM:601852"
/translation="MPGPSPGLRRALLGLWAALGLGLFGLSAVSQEPFWADLQPRVAF
VERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFR
CARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRG
AQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPHGLGLFENSSAP
RELRTFSLSPDAPRLAAPRLLEVGSERPVSCTLDGLFPASEARVYLALGDQNLSPDVT
LEGDAFVATATATASAEQEGARQLICNVTLGGENRETRENVTIYSFPAPLLTLSEPSV
SEGQMVTVTCAAGTQALVTLEGVPAAVPGQPAQLQLNATENDDRRSFFCDATLDVDGE
TLIKNRSAELRVLYAPRLDDSDCPRSWTWPEGPEQTLRCEARGNPEPSVHCARSDGGA
VLALGLLGPVTRALSGTYRCKAANDQGEAVKDVTLTVEYAPALDSVGCPERITWLEGT
EASLSCVAHGVPPPDVICVRSGELGAVIEGLLRVAREHAGTYRCEATNPRGSAAKNVA
VTVEYGPRFEEPSCPSNWTWVEGSGRLFSCEVDGKPQPSVKCVGSGGATEGVLLPLAP
PDPSPRAPRIPRVLAPGIYVCNATNRHGSVAKTVVVSAESPPEMDESTCPSHQTWLEG
AEASALACAARGRPSPGVRCSREGIPWPEQQRVSREDAGTYHCVATNAHGTDSRTVTV
GVEYRPVVAELAASPPGGVRPGGNFTLTCRAEAWPPAQISWRAPPGALNIGLSSNNST
LSVAGAMGSHGGEYECAATNAHGRHARRITVRVAGPWLWVAVGGAAGGAALLAAGAGL
AFYVQSTACKKGEYNVQEAESSGEAVCLNGAGGGAGGAAGAEGGPEAAGGAAESPAEG
EVFAIQLTSA"
BASE COUNT 505 a 995 c 1023 g 489 t
ORIGIN
1 gtcctctagc ccagctcctc ggctcgcgct ctcctcgcct cctgtgcttt ccccgccgcg
61 gcgatgccag ggccttcgcc agggctgcgc cgggcgctac tcggcctctg ggctgctctg
121 ggcctggggc tcttcggcct ctcagcggtc tcgcaggagc ccttctgggc ggacctgcag
181 cctcgcgtgg cgttcgtgga gcgcgggggc tcgctgtggc tgaattgcag caccaactgc
241 cctcggccgg agcgcggtgg cctggagacc tcgctgcgcc gaaacgggac ccagaggggt
301 ttgcgttggt tggcgcggca gctggtggac attcgcgagc cggagactca gcccgtctgc
361 ttcttccgct gcgcgcggcg cacactacag gcgcgtgggc tcattcgcac tttccagcga
421 ccagatcgcg tagagctgat gccgctgcct ccctggcagc cggtgggcga gaacttcacc
481 ctgagctgta gggtccccgg cgccgggccc cgtgcgagcc tcacgctgac cctgctgcgg
541 ggcgcccagg agctgatccg ccgcagcttc gccggtgaac caccccgagc gcggggcgcg
601 gtgctcacag ccacggtact ggctcggagg gaggaccatg gagccaattt ctcgtgtcgc
661 gccgagctgg acctgcggcc gcacggactg ggactgtttg aaaacagctc ggcccccaga
721 gagctccgaa ccttctccct gtctccggat gccccgcgcc tcgctgctcc ccggctcttg
781 gaagttggct cggaaaggcc cgtgagctgc actctggacg gactgtttcc agcctcagag
841 gccagggtct acctcgcact gggggaccag aatctgagtc ctgatgtcac cctcgaaggg
901 gacgcattcg tggccactgc cacagccaca gctagcgcag agcaggaggg tgccaggcag
961 ctgatctgca acgtcaccct ggggggcgaa aaccgggaga cccgggagaa cgtgaccatc
1021 tacagcttcc cggcaccact cctgaccctg agcgaaccca gcgtctccga ggggcagatg
1081 gtgacagtaa cctgcgcagc tgggacccaa gctctggtca cactggaggg agttccagcc
1141 gcggtcccgg ggcagcccgc ccagcttcag ctaaatgcca ccgagaacga cgacagacgc
1201 agcttcttct gcgacgccac cctcgatgtg gacggggaga ccctgatcaa gaacaggagc
1261 gcagagcttc gtgtcctata cgctccccgg ctagacgatt cggactgccc caggagttgg
1321 acgtggcccg agggcccaga gcagacgctg cgctgcgagg cccgcgggaa cccagaaccc
1381 tcagtgcact gtgcgcgctc cgacggcggg gccgtgctgg ctctgggcct gctgggtcca
1441 gtcactcggg cgctctcagg cacttaccgc tgcaaggcgg ccaatgatca aggcgaggcg
1501 gtcaaggacg taacgctaac ggtggagtac gcaccagcgc tggacagcgt gggctgccca
1561 gaacgcatta cttggctgga gggaacagaa gcctcgctga gctgtgtggc gcacggggta
1621 ccgccgcctg atgtgatctg cgtgcgctct ggagaactcg gggccgtcat cgaagggctg
1681 ttgcgtgtgg cccgggagca tgcgggcact taccgctgcg aagccaccaa ccctcggggc
1741 tctgcggcca aaaatgtggc cgtcacggtg gaatatggcc ccaggtttga ggagccgagc
1801 tgccccagca attggacatg ggtggaagga tctgggcgcc tgttttcctg tgaggtcgat
1861 gggaagccac agccaagcgt gaagtgcgtg ggctccgggg gcgccactga gggggtgctg
1921 ctgccgctgg cacccccaga ccctagtccc agagctccca gaatccctag agtcctggca
1981 cccggtatct acgtctgcaa cgccaccaac cgccacggct ccgtggccaa aacagtcgtc
2041 gtgagcgcgg agtcgccacc ggagatggat gaatctacct gcccaagtca ccagacgtgg
2101 ctggaagggg ctgaggcttc cgcgctggcc tgcgccgccc ggggtcgccc ttccccagga
2161 gtgcgctgct ctcgggaagg catcccatgg cctgagcagc agcgcgtgtc ccgagaggac
2221 gcgggcactt accactgtgt ggccaccaat gcgcatggca cggactcccg gaccgtcact
2281 gtgggcgtgg aataccggcc agtggtggcc gaacttgctg cctcgccccc tggaggcgtg
2341 cgcccaggag gaaacttcac gttgacctgc cgcgcggagg cctggcctcc agcccagatc
2401 agctggcgcg cgcccccggg ggccctcaac atcggcctgt cgagcaacaa cagcacactg
2461 agcgtggcag gcgccatggg aagccacggc ggcgagtacg agtgcgcagc caccaacgcg
2521 cacgggcgcc acgcgcggcg catcacggtg cgcgtggccg gtccgtggct atgggtcgcc
2581 gtgggcggcg cggcgggggg cgcggcgctg ctggccgcgg gggccggcct ggccttctac
2641 gtgcagtcca ccgcctgcaa gaagggcgag tacaacgtgc aggaggccga gagctcaggc
2701 gaggccgtgt gtctcaacgg agcgggcggc ggcgctggcg gggcggcagg cgcggagggc
2761 ggacccgagg cggcgggggg cgcggccgag tcgccggcgg agggcgaggt cttcgccata
2821 cagctgacat cggcgtgagc ccgctcccct ctccccgcgg gccgggggac gccccccaga
2881 ctcacacggg ggcttattta ttgctttatt tatttactta ttcatttatt tatgtattca
2941 actccaaggg cgtcaccccc attttctacc catcccctca ataaagtttt tataaaggaa
3001 aaaaaaaaaa aa
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